Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   HLK66_RS02030 Genome accession   NZ_CP053315
Coordinates   399869..400825 (+) Length   318 a.a.
NCBI ID   WP_047944228.1    Uniprot ID   A0A0J1L0Y7
Organism   Niallia circulans strain GN03     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 394869..405825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLK66_RS02010 (HLK66_02015) qoxA 395847..396776 (+) 930 WP_095331091.1 cytochrome aa3 quinol oxidase subunit II -
  HLK66_RS02015 (HLK66_02020) qoxB 396766..398718 (+) 1953 WP_095331089.1 cytochrome aa3 quinol oxidase subunit I -
  HLK66_RS02020 (HLK66_02025) qoxC 398715..399320 (+) 606 WP_171510280.1 cytochrome aa3 quinol oxidase subunit III -
  HLK66_RS02025 (HLK66_02030) qoxD 399327..399632 (+) 306 WP_047944233.1 cytochrome aa3 quinol oxidase subunit IV -
  HLK66_RS02030 (HLK66_02035) ceuB 399869..400825 (+) 957 WP_047944228.1 ABC transporter permease Machinery gene
  HLK66_RS02035 (HLK66_02040) - 400815..401768 (+) 954 WP_171510281.1 iron chelate uptake ABC transporter family permease subunit -
  HLK66_RS02040 (HLK66_02045) - 401762..402520 (+) 759 WP_095331086.1 ABC transporter ATP-binding protein -
  HLK66_RS02045 (HLK66_02050) - 402807..403757 (+) 951 WP_171509237.1 siderophore ABC transporter substrate-binding protein -
  HLK66_RS02050 (HLK66_02055) - 403926..404918 (+) 993 WP_095331083.1 Gfo/Idh/MocA family oxidoreductase -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35245.62 Da        Isoelectric Point: 9.7763

>NTDB_id=444050 HLK66_RS02030 WP_047944228.1 399869..400825(+) (ceuB) [Niallia circulans strain GN03]
MKIRHLTIMLIVLSIISLFVGVIDIHPQNIFHLTADQREILLISRFPRLVSIIIAGVSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILVALMLFTGESPIIKMLIAFVFALGGTFLFMRILNMIKFKDAIFIPLIGLMLGNIVSSITTFFAMKYDLI
QNMSSWLQGDFSLIMEGRYELLYISIPMVIVAYLYANKFTIAGLGEDFSTNLGLNHKRVVNIGLIIVALVSSVVLLTVGM
IPFLGLIIPNIVSLYRGDNLKNSLTHTALLGAVFVLFCDILGRVIIYPYEISIGVMVGVIGSGVFLYLLVRRKSYDAT

Nucleotide


Download         Length: 957 bp        

>NTDB_id=444050 HLK66_RS02030 WP_047944228.1 399869..400825(+) (ceuB) [Niallia circulans strain GN03]
ATGAAAATTAGACACTTAACTATAATGTTAATAGTTTTATCTATCATCTCCCTATTTGTAGGAGTAATTGATATTCATCC
ACAAAATATTTTTCATTTAACTGCAGATCAGAGAGAAATTCTCTTGATTAGCAGATTTCCTCGCTTAGTCAGTATTATTA
TAGCTGGTGTTAGTCTAAGTATTTGTGGACTTATCATGCAGCAGATATCGAGGAATAAATTTGTTTCTCCTACAACTGCT
GGAACAATGGACTGGGCGAGACTTGGGATATTAGTAGCTTTAATGCTTTTTACAGGCGAGAGCCCGATTATTAAAATGTT
AATCGCTTTTGTATTCGCACTCGGAGGAACCTTTTTGTTTATGCGAATACTTAATATGATTAAATTTAAAGATGCTATCT
TTATTCCATTAATTGGTTTAATGCTAGGGAATATTGTTAGCTCGATTACCACTTTTTTTGCAATGAAATATGATTTGATT
CAAAATATGTCTTCATGGTTACAAGGTGATTTTTCTTTAATCATGGAAGGGCGTTATGAACTTCTTTACATAAGTATTCC
GATGGTTATTGTTGCATACTTATATGCAAATAAATTTACAATTGCTGGATTGGGTGAGGATTTTTCTACTAATCTTGGTC
TCAATCACAAAAGAGTAGTGAATATAGGGTTAATTATCGTAGCGTTAGTTTCTTCTGTTGTATTGCTGACAGTAGGAATG
ATTCCTTTTCTAGGTCTAATCATTCCCAATATCGTTTCGTTATACAGAGGAGATAATTTGAAAAATAGCTTGACCCATAC
AGCATTATTAGGAGCAGTCTTTGTATTATTCTGTGATATTCTTGGAAGAGTGATTATTTATCCGTATGAGATATCGATCG
GTGTGATGGTGGGAGTCATCGGAAGTGGAGTATTCTTGTATTTACTAGTAAGGAGAAAGTCTTATGATGCAACCTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J1L0Y7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.381

99.057

0.519