Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   HLV60_RS06225 Genome accession   NZ_CP053292
Coordinates   1490334..1491287 (+) Length   317 a.a.
NCBI ID   WP_033127883.1    Uniprot ID   -
Organism   Clostridium butyricum strain 16-3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1485334..1496287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLV60_RS06200 (HLV60_06205) - 1485453..1486133 (-) 681 WP_002579991.1 TIGR00266 family protein -
  HLV60_RS06205 (HLV60_06210) - 1486369..1486866 (+) 498 WP_035762898.1 hypothetical protein -
  HLV60_RS06210 (HLV60_06215) - 1487123..1488076 (+) 954 WP_002579993.1 L-lactate dehydrogenase -
  HLV60_RS06215 (HLV60_06220) - 1488126..1489625 (+) 1500 WP_043852783.1 sodium:solute symporter family protein -
  HLV60_RS06220 (HLV60_06225) - 1489691..1489999 (+) 309 WP_035762897.1 hypothetical protein -
  HLV60_RS06225 (HLV60_06230) ceuB 1490334..1491287 (+) 954 WP_033127883.1 iron chelate uptake ABC transporter family permease subunit Machinery gene
  HLV60_RS06230 (HLV60_06235) - 1491277..1492233 (+) 957 WP_043852785.1 iron chelate uptake ABC transporter family permease subunit -
  HLV60_RS06235 (HLV60_06240) - 1492314..1493069 (+) 756 WP_035762895.1 ATP-binding cassette domain-containing protein -
  HLV60_RS06240 (HLV60_06245) - 1493147..1494085 (+) 939 WP_035762894.1 siderophore ABC transporter substrate-binding protein -
  HLV60_RS06245 (HLV60_06250) tyrS 1494878..1496083 (+) 1206 WP_035789701.1 tyrosine--tRNA ligase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34523.82 Da        Isoelectric Point: 10.0188

>NTDB_id=443956 HLV60_RS06225 WP_033127883.1 1490334..1491287(+) (ceuB) [Clostridium butyricum strain 16-3]
MSKKILIPMFIILCIISLFIGVNDISVMDIINFDSEKINILLISRLPRLVGLVVAGVGMSIGGVIMQQISNNKFVSPTTA
ATLDSAQFGVIVAMMIFPVASLTQKMIVAFIFSLIGTFLFMGILKKIKMKNAIFIPLVGIMVGNVIGSLTEFIAYKNNLV
QNVGSFFQGKFALVIKGNYEMLYFTIPLLIVAFMYANKFTIIGMGEDISKNLGLDYKKVSNIGITIVALVSALVIITVGN
IPFIGLIVPNLVSLFNGDNVSKNIGITALFGANFVILCDIIGRLVIYPYEVSISLTVGVIGSIIFLYLILRRNRNEA

Nucleotide


Download         Length: 954 bp        

>NTDB_id=443956 HLV60_RS06225 WP_033127883.1 1490334..1491287(+) (ceuB) [Clostridium butyricum strain 16-3]
ATGAGTAAAAAAATATTAATACCGATGTTTATTATATTGTGTATAATTTCACTGTTCATTGGAGTGAACGACATATCAGT
AATGGATATAATAAACTTTGATAGTGAGAAAATAAATATTTTATTGATAAGCAGATTACCAAGACTTGTTGGGCTTGTTG
TTGCTGGTGTTGGAATGAGTATCGGTGGAGTGATAATGCAGCAGATAAGTAACAACAAATTTGTATCACCCACAACAGCA
GCAACTCTTGATTCAGCACAATTTGGTGTAATTGTAGCTATGATGATTTTCCCAGTTGCATCTTTAACGCAAAAGATGAT
TGTAGCCTTTATATTTTCACTTATAGGAACATTTTTATTTATGGGAATTCTAAAAAAGATAAAGATGAAAAATGCCATAT
TCATACCACTTGTAGGGATTATGGTTGGAAATGTTATCGGATCACTTACAGAGTTTATAGCCTATAAGAATAACCTTGTT
CAAAATGTGGGATCTTTCTTTCAAGGTAAATTTGCACTTGTGATTAAAGGAAATTATGAAATGCTATATTTCACTATTCC
TTTGCTTATAGTGGCATTTATGTATGCAAACAAATTTACAATAATAGGTATGGGAGAAGATATTTCAAAAAATCTAGGTC
TTGATTATAAGAAAGTCAGTAATATTGGAATTACCATAGTGGCATTAGTTAGTGCACTGGTTATTATAACAGTAGGTAAT
ATACCATTTATAGGTTTAATTGTTCCAAATTTAGTATCACTTTTTAATGGAGATAATGTAAGTAAAAATATAGGAATTAC
AGCTTTGTTTGGAGCAAATTTTGTGATTTTATGTGACATAATTGGTAGACTTGTAATTTATCCATATGAGGTTTCAATAA
GTCTTACTGTAGGAGTTATAGGAAGTATAATATTCCTTTATTTAATATTAAGGAGAAATAGAAATGAAGCATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

48.882

98.738

0.483