Detailed information NTG0443943

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ITG72_RS07085
• Genome accession: NZ_CP064395
• Coordinates: 1501604..1502608 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain SRRSH1408
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1496604..1507608

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ITG72_RS07055 (ITG72_07055)	fghA	1496696..1497547 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
ITG72_RS07060 (ITG72_07060)	ispF	1497618..1498091 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ITG72_RS07065 (ITG72_07065)	truD	1498088..1499155 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
ITG72_RS07070 (ITG72_07070)	surE	1499143..1499892 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
ITG72_RS07075 (ITG72_07075)	-	1499925..1500560 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ITG72_RS07080 (ITG72_07080)	-	1500606..1501499 (+)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
ITG72_RS07085 (ITG72_07085)	rpoS	1501604..1502608 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
ITG72_RS07090 (ITG72_07090)	fdxA	1503034..1503357 (-)	324	WP_003092272.1	ferredoxin FdxA	-
ITG72_RS07095 (ITG72_07095)	mutS	1503424..1505991 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
ITG72_RS07100 (ITG72_07100)	-	1506117..1507124 (-)	1008	WP_191519407.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=443943 ITG72_RS07085 WP_003113871.1 1501604..1502608(+) (rpoS) [Pseudomonas aeruginosa strain SRRSH1408]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=443943 ITG72_RS07085 WP_003113871.1 1501604..1502608(+) (rpoS) [Pseudomonas aeruginosa strain SRRSH1408]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
TCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTTGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653