Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   HLB41_RS20655 Genome accession   NZ_CP053289
Coordinates   4069543..4069866 (+) Length   107 a.a.
NCBI ID   WP_000578885.1    Uniprot ID   A0A9W5VG71
Organism   Bacillus cereus strain WPySW2     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 4064543..4074866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLB41_RS20640 (HLB41_20670) - 4065057..4066424 (-) 1368 WP_000028375.1 aldehyde dehydrogenase -
  HLB41_RS20645 (HLB41_20675) inhA1 4066596..4068986 (-) 2391 WP_001035936.1 M6 family metalloprotease immune inhibitor InhA1 -
  HLB41_RS20650 (HLB41_20680) - 4069329..4069463 (+) 135 WP_000276219.1 anti-repressor SinI family protein -
  HLB41_RS20655 (HLB41_20685) sinR 4069543..4069866 (+) 324 WP_000578885.1 helix-turn-helix domain-containing protein Regulator
  HLB41_RS20660 (HLB41_20690) calY 4069939..4070532 (-) 594 WP_000053713.1 biofilm matrix protein CalY -
  HLB41_RS20665 (HLB41_20695) - 4070918..4071760 (-) 843 WP_065382162.1 DUF4047 domain-containing protein -
  HLB41_RS20670 (HLB41_20700) - 4071895..4072482 (-) 588 WP_000172852.1 CalY family protein -
  HLB41_RS20675 (HLB41_20705) - 4072543..4073112 (-) 570 WP_000767792.1 signal peptidase I -
  HLB41_RS20680 (HLB41_20710) - 4073303..4074589 (-) 1287 WP_000247030.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12349.19 Da        Isoelectric Point: 9.6244

>NTDB_id=443926 HLB41_RS20655 WP_000578885.1 4069543..4069866(+) (sinR) [Bacillus cereus strain WPySW2]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=443926 HLB41_RS20655 WP_000578885.1 4069543..4069866(+) (sinR) [Bacillus cereus strain WPySW2]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGGATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692