Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   HLB41_RS06190 Genome accession   NZ_CP053289
Coordinates   1220830..1221576 (+) Length   248 a.a.
NCBI ID   WP_000487009.1    Uniprot ID   -
Organism   Bacillus cereus strain WPySW2     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1215830..1226576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLB41_RS06160 (HLB41_06170) - 1216119..1218263 (+) 2145 WP_000091510.1 HD family phosphohydrolase -
  HLB41_RS06165 (HLB41_06175) ybeY 1218260..1218730 (+) 471 WP_001050397.1 rRNA maturation RNase YbeY -
  HLB41_RS06170 (HLB41_06180) - 1218727..1219080 (+) 354 WP_000715464.1 diacylglycerol kinase family protein -
  HLB41_RS06175 (HLB41_06185) - 1219180..1219578 (+) 399 WP_065382013.1 cytidine deaminase -
  HLB41_RS06180 (HLB41_06190) era 1219571..1220476 (+) 906 WP_001080230.1 GTPase Era -
  HLB41_RS06185 (HLB41_06195) - 1220653..1220796 (+) 144 WP_000883924.1 YqzL family protein -
  HLB41_RS06190 (HLB41_06200) recO 1220830..1221576 (+) 747 WP_000487009.1 DNA repair protein RecO Machinery gene
  HLB41_RS06195 (HLB41_06205) - 1221684..1222316 (+) 633 WP_000583756.1 helix-turn-helix transcriptional regulator -
  HLB41_RS06200 (HLB41_06210) - 1222346..1223158 (+) 813 WP_000368944.1 pyruvate, water dikinase regulatory protein -
  HLB41_RS29460 - 1223526..1223657 (+) 132 WP_002024806.1 hypothetical protein -
  HLB41_RS06205 (HLB41_06215) - 1223719..1223937 (+) 219 WP_002164428.1 hypothetical protein -
  HLB41_RS06210 (HLB41_06220) dnaG 1224019..1225815 (+) 1797 WP_000528221.1 DNA primase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28618.21 Da        Isoelectric Point: 8.0566

>NTDB_id=443910 HLB41_RS06190 WP_000487009.1 1220830..1221576(+) (recO) [Bacillus cereus strain WPySW2]
MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGHFLIQMGSGLGTLQQGEIISTMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDPYRIPVGEAVHKLLRLFFHFDLHRLGNVSVKDSTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=443910 HLB41_RS06190 WP_000487009.1 1220830..1221576(+) (recO) [Bacillus cereus strain WPySW2]
ATGTTTCAAAAAGTTGAGGGCATCGTTATCCGTACGACAGATTACGGAGAAACGAACAAAATTGTTACAATATTCTCAAG
AGAACTTGGTAAGGTAAGTGCAATGGCAAGAGGGGCAAAAAAACCGAAAAGCCGATTAGCATCTGTGTCGCAATTAATGA
CACATGGCCATTTTCTAATTCAAATGGGATCTGGGCTTGGAACATTGCAACAAGGCGAGATTATTTCAACTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTGTTGAGTTAACTGATAAAGCAACAGAAGATAAAAAACA
TAATCCGTATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATCCAGAAGTATTATCATTAA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCGCCCGTACTTTGATACATGTGCGATTTGTCATCAAGAAACAGAC
TTTGTCGCCTTCTCCGTCAGGGAAGGCGGTTTTCTGTGCTCACGTCATGCAGAGCAAGACCCATATCGTATACCGGTAGG
AGAAGCTGTTCATAAATTATTACGTCTTTTCTTCCATTTCGATTTACATAGGCTCGGAAATGTATCGGTAAAGGATAGCA
CAAAAAAACAAATGCGTTTAGTATTGAATACATATTATGATGAATATTGCGGAATTTATTTGAAATCAAGACGTTTTTTA
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.466

99.597

0.552