Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   HLB41_RS00240 Genome accession   NZ_CP053289
Coordinates   43289..44416 (-) Length   375 a.a.
NCBI ID   WP_000470745.1    Uniprot ID   A0A9W5QA17
Organism   Bacillus cereus strain WPySW2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 38289..49416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLB41_RS00230 (HLB41_00230) gyrA 38768..41239 (-) 2472 WP_001282864.1 DNA gyrase subunit A -
  HLB41_RS00235 (HLB41_00235) gyrB 41328..43250 (-) 1923 WP_000435982.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  HLB41_RS00240 (HLB41_00240) recF 43289..44416 (-) 1128 WP_000470745.1 DNA replication/repair protein RecF Machinery gene
  HLB41_RS00245 (HLB41_00245) yaaA 44429..44641 (-) 213 WP_000821364.1 S4 domain-containing protein YaaA -
  HLB41_RS00250 (HLB41_00250) dnaN 44769..45914 (-) 1146 WP_001212884.1 DNA polymerase III subunit beta -
  HLB41_RS00255 (HLB41_00255) dnaA 46093..47433 (-) 1341 WP_000428017.1 chromosomal replication initiator protein DnaA -
  HLB41_RS00260 (HLB41_00260) rpmH 47998..48132 (+) 135 WP_000831901.1 50S ribosomal protein L34 -
  HLB41_RS00265 (HLB41_00265) rnpA 48209..48556 (+) 348 WP_000726619.1 ribonuclease P protein component -
  HLB41_RS00270 (HLB41_00270) spoIIIJ 48609..49385 (+) 777 WP_000727734.1 YidC family membrane integrase SpoIIIJ -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43362.67 Da        Isoelectric Point: 6.6001

>NTDB_id=443894 HLB41_RS00240 WP_000470745.1 43289..44416(-) (recF) [Bacillus cereus strain WPySW2]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKEAKTIHVTNGTVDCEIDRE

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=443894 HLB41_RS00240 WP_000470745.1 43289..44416(-) (recF) [Bacillus cereus strain WPySW2]
TTGTTTATTTCAGAAATACAATTAAAAAACTATCGCAATTATGAAAAATTAGAGCTTTCCTTTGAAGATAAGGTAAATGT
AATTATCGGCGAAAATGCGCAAGGGAAAACAAATTTGATGGAAGCTATTTATGTTTTAGCGATGGCGAAATCTCATAGAA
CCTCTAATGATCGCGAACTTATCCGCTGGGATGAAGATTTTGGTCAAATAAAAGGGAAATTACAAAAAAGAAACAGTTCT
TTGTCTTTGGAATTAAATATTTCGAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAGCAAAAGTTAAGTCAATA
TATTGGCGTGATGAACGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGACAAATAGCTCCTGTATATTTGTATGAATTAAGTCAATATCAAAAGGTGCTCACGCAACGA
AATCACTTGTTGAAAAAAATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTAATTGA
GCATGGTGCGAAAATACTGCAAAAACGTTTTGAATTTTTGCATTTGCTACAGGAATGGGCAGCTCCAATTCATCGAGGTA
TAAGCCGTGGATTAGAAGAGTTAGAAATTGTCTATAAACCAAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCTGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTAATTGGTCCTCATCG
TGACGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCGCAAGGACAACAACGAACGACCGCACTAT
CCCTAAAATTAGCTGAAATTGAATTGATTTATTCAGAGGTTAAAGAATATCCAATCCTTTTGTTGGATGATGTTTTATCA
GAATTAGATGATTATCGTCAATCACATCTTTTAAATACAATTCAAGGAAAAGTGCAAACATTTGTTACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGAAGCGAAAACAATTCATGTAACGAACGGCACTGTAGATTGTGAAATAGATA
GGGAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.576

98.133

0.653