Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   HLB41_RS00040 Genome accession   NZ_CP053289
Coordinates   6820..7104 (+) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus cereus strain WPySW2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1820..12104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLB41_RS00025 (HLB41_00025) rnmV 2646..3203 (-) 558 WP_000692835.1 ribonuclease M5 -
  HLB41_RS00030 (HLB41_00030) - 3418..4185 (-) 768 WP_000895851.1 TatD family hydrolase -
  HLB41_RS00035 (HLB41_00035) metG 4352..6361 (-) 2010 WP_072770006.1 methionine--tRNA ligase -
  HLB41_RS00040 (HLB41_00040) abrB 6820..7104 (+) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  HLB41_RS00045 (HLB41_00045) rsmI 7125..8000 (-) 876 WP_000267821.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  HLB41_RS00050 (HLB41_00050) - 7969..8259 (-) 291 WP_000414350.1 GIY-YIG nuclease family protein -
  HLB41_RS00055 (HLB41_00055) - 8246..8986 (-) 741 WP_001055366.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  HLB41_RS00060 (HLB41_00060) yabA 9069..9419 (-) 351 WP_000412063.1 DNA replication initiation control protein YabA -
  HLB41_RS00065 (HLB41_00065) - 9434..10261 (-) 828 WP_000272429.1 stage 0 sporulation family protein -
  HLB41_RS00070 (HLB41_00070) holB 10267..11250 (-) 984 WP_000169561.1 DNA polymerase III subunit delta' -
  HLB41_RS00075 (HLB41_00075) tmk 11286..11912 (-) 627 WP_000677221.1 dTMP kinase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=443892 HLB41_RS00040 WP_000843036.1 6820..7104(+) (abrB) [Bacillus cereus strain WPySW2]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=443892 HLB41_RS00040 WP_000843036.1 6820..7104(+) (abrB) [Bacillus cereus strain WPySW2]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGACGCTCTTGAAATCTATGTTGATGACGAAAAAATCATCTTAAAGAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGACGGTAACCTTTCTTTAGCTGAAGGTAAAATCATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851