Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HHJ45_RS14570 Genome accession   NZ_CP053281
Coordinates   2991189..2991818 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain SCU-308     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2986189..2996818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ45_RS14555 (HHJ45_14555) helD 2986431..2988485 (-) 2055 WP_001315388.1 DNA helicase IV -
  HHJ45_RS14560 (HHJ45_14560) yccF 2988608..2989054 (+) 447 WP_001261235.1 YccF domain-containing protein -
  HHJ45_RS14565 (HHJ45_14565) yccS 2989064..2991226 (+) 2163 WP_000875044.1 YccS family putative transporter -
  HHJ45_RS14570 (HHJ45_14570) sxy/tfoX 2991189..2991818 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HHJ45_RS14575 (HHJ45_14575) sulA 2992037..2992546 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  HHJ45_RS14580 (HHJ45_14580) ompA 2992903..2993955 (+) 1053 WP_000750419.1 porin OmpA -
  HHJ45_RS14585 (HHJ45_14585) matP 2994030..2994482 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  HHJ45_RS14590 (HHJ45_14590) ycbZ 2994668..2996428 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=443839 HHJ45_RS14570 WP_000839153.1 2991189..2991818(-) (sxy/tfoX) [Escherichia coli strain SCU-308]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=443839 HHJ45_RS14570 WP_000839153.1 2991189..2991818(-) (sxy/tfoX) [Escherichia coli strain SCU-308]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1