Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HLY12_RS13660 Genome accession   NZ_CP053259
Coordinates   2874111..2874740 (-) Length   209 a.a.
NCBI ID   WP_001612760.1    Uniprot ID   A0A377CFT3
Organism   Escherichia coli strain GF3-3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2869111..2879740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLY12_RS13645 (HLY12_13655) helD 2869353..2871407 (-) 2055 WP_000420536.1 DNA helicase IV -
  HLY12_RS13650 (HLY12_13660) yccF 2871530..2871976 (+) 447 WP_001261235.1 YccF domain-containing protein -
  HLY12_RS13655 (HLY12_13665) yccS 2871986..2874148 (+) 2163 WP_000323868.1 YccS family putative transporter -
  HLY12_RS13660 (HLY12_13670) sxy/tfoX 2874111..2874740 (-) 630 WP_001612760.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HLY12_RS13665 (HLY12_13675) sulA 2874959..2875468 (+) 510 WP_000288706.1 SOS-induced cell division inhibitor SulA -
  HLY12_RS13670 (HLY12_13680) ompA 2875825..2876865 (+) 1041 WP_171284310.1 porin OmpA -
  HLY12_RS13675 (HLY12_13685) matP 2876942..2877394 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  HLY12_RS13680 (HLY12_13690) ycbZ 2877580..2879340 (+) 1761 WP_001612759.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24146.03 Da        Isoelectric Point: 9.4081

>NTDB_id=443817 HLY12_RS13660 WP_001612760.1 2874111..2874740(-) (sxy/tfoX) [Escherichia coli strain GF3-3]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSNGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=443817 HLY12_RS13660 WP_001612760.1 2874111..2874740(-) (sxy/tfoX) [Escherichia coli strain GF3-3]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTATTTGCGATGGTTTCTAATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A377CFT3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995