Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HLY11_RS05675 Genome accession   NZ_CP053258
Coordinates   1163596..1164225 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain GF4-3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1158596..1169225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLY11_RS05660 (HLY11_05660) helD 1158838..1160892 (-) 2055 WP_171459534.1 DNA helicase IV -
  HLY11_RS05665 (HLY11_05665) yccF 1161015..1161461 (+) 447 WP_001261231.1 YccF domain-containing protein -
  HLY11_RS05670 (HLY11_05670) yccS 1161471..1163633 (+) 2163 WP_000875041.1 YccS family putative transporter -
  HLY11_RS05675 (HLY11_05675) sxy/tfoX 1163596..1164225 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HLY11_RS05680 (HLY11_05680) sulA 1164444..1164953 (+) 510 WP_171459535.1 SOS-induced cell division inhibitor SulA -
  HLY11_RS05685 (HLY11_05685) ompA 1165310..1166362 (+) 1053 WP_171459536.1 porin OmpA -
  HLY11_RS05690 (HLY11_05690) matP 1166438..1166890 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  HLY11_RS05695 (HLY11_05695) ycbZ 1167076..1168836 (+) 1761 WP_040090211.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=443784 HLY11_RS05675 WP_000839153.1 1163596..1164225(-) (sxy/tfoX) [Escherichia coli strain GF4-3]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=443784 HLY11_RS05675 WP_000839153.1 1163596..1164225(-) (sxy/tfoX) [Escherichia coli strain GF4-3]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGTATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1