Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   C528_RS02555 Genome accession   NZ_CP053256
Coordinates   548918..549322 (+) Length   134 a.a.
NCBI ID   WP_001916959.1    Uniprot ID   A0AAE7AN63
Organism   Helicobacter pylori A45     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 543918..554322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C528_RS02520 (C528_002520) - 544096..545034 (-) 939 WP_001916964.1 tetraacyldisaccharide 4'-kinase -
  C528_RS02525 (C528_002525) - 545031..545813 (-) 783 WP_001916963.1 NAD+ synthase -
  C528_RS02535 (C528_002535) ilvC 546062..547054 (+) 993 WP_001916962.1 ketol-acid reductoisomerase -
  C528_RS02540 (C528_002540) minD 547073..547879 (+) 807 WP_001019104.1 septum site-determining protein MinD -
  C528_RS02545 (C528_002545) minE 547876..548109 (+) 234 WP_001916961.1 cell division topological specificity factor MinE -
  C528_RS02550 (C528_002550) dprA 548121..548921 (+) 801 WP_001916960.1 DNA-processing protein DprA Machinery gene
  C528_RS02555 (C528_002555) dprB 548918..549322 (+) 405 WP_001916959.1 Holliday junction resolvase RuvX Machinery gene
  C528_RS02560 (C528_002560) - 549448..550242 (+) 795 WP_001916957.1 tetratricopeptide repeat protein -
  C528_RS02565 (C528_002565) - 550431..550769 (+) 339 WP_001916956.1 hypothetical protein -
  C528_RS02570 (C528_002570) - 550753..551319 (+) 567 WP_001916955.1 hypothetical protein -
  C528_RS02575 (C528_002575) - 551466..552347 (-) 882 WP_001916954.1 RluA family pseudouridine synthase -
  C528_RS02580 (C528_002580) recJ 552347..553897 (-) 1551 WP_001916953.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15299.84 Da        Isoelectric Point: 9.7403

>NTDB_id=443774 C528_RS02555 WP_001916959.1 548918..549322(+) (dprB) [Helicobacter pylori A45]
MILACDVGLKRIGIAVLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPHESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACRILERYYQQVLKKH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=443774 C528_RS02555 WP_001916959.1 548918..549322(+) (dprB) [Helicobacter pylori A45]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTGTGCTTTTAAACGGCGTTATTTTGCCTTTAGAAGC
GATTTTGCGCCACAACAGAAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCCATGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTATCAGCAGGTTTTGAAAAAGC
ACTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

95.522

100

0.955