Detailed information NTG0443739

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ITG70_RS06795
• Genome accession: NZ_CP064392
• Coordinates: 1450438..1451442 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain SRRSH15
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1445438..1456442

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ITG70_RS06765 (ITG70_06770)	fghA	1445530..1446381 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
ITG70_RS06770 (ITG70_06775)	ispF	1446452..1446925 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ITG70_RS06775 (ITG70_06780)	truD	1446922..1447989 (+)	1068	WP_004345456.1	tRNA pseudouridine(13) synthase TruD	-
ITG70_RS06780 (ITG70_06785)	surE	1447977..1448726 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
ITG70_RS06785 (ITG70_06790)	-	1448759..1449394 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ITG70_RS06790 (ITG70_06795)	-	1449440..1450333 (+)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
ITG70_RS06795 (ITG70_06800)	rpoS	1450438..1451442 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
ITG70_RS06800 (ITG70_06805)	fdxA	1451869..1452192 (-)	324	WP_003119354.1	ferredoxin FdxA	-
ITG70_RS06805 (ITG70_06810)	mutS	1452259..1454826 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
ITG70_RS06810 (ITG70_06815)	-	1454952..1455959 (-)	1008	WP_010793357.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=443739 ITG70_RS06795 WP_003113871.1 1450438..1451442(+) (rpoS) [Pseudomonas aeruginosa strain SRRSH15]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=443739 ITG70_RS06795 WP_003113871.1 1450438..1451442(+) (rpoS) [Pseudomonas aeruginosa strain SRRSH15]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATTCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653