Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   IUJ43_RS21270 Genome accession   NZ_CP064391
Coordinates   4638137..4638661 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain PartH-Paeruginosa-RM8376     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4633137..4643661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ43_RS21255 (IUJ43_21200) aroB 4634253..4635359 (-) 1107 WP_003114574.1 3-dehydroquinate synthase -
  IUJ43_RS21260 (IUJ43_21205) aroK 4635409..4635927 (-) 519 WP_003095833.1 shikimate kinase AroK -
  IUJ43_RS21265 (IUJ43_21210) pilQ 4635939..4638083 (-) 2145 WP_003114575.1 type 4a pilus secretin PilQ Machinery gene
  IUJ43_RS21270 (IUJ43_21215) comL/pilP 4638137..4638661 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  IUJ43_RS21275 (IUJ43_21220) pilO 4638658..4639281 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  IUJ43_RS21280 (IUJ43_21225) pilN 4639278..4639874 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  IUJ43_RS21285 (IUJ43_21230) pilM 4639874..4640938 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  IUJ43_RS21290 (IUJ43_21235) - 4641123..4643591 (+) 2469 WP_003114576.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=443682 IUJ43_RS21270 WP_003095836.1 4638137..4638661(-) (comL/pilP) [Pseudomonas aeruginosa strain PartH-Paeruginosa-RM8376]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=443682 IUJ43_RS21270 WP_003095836.1 4638137..4638661(-) (comL/pilP) [Pseudomonas aeruginosa strain PartH-Paeruginosa-RM8376]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362