Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL-C   Type   Machinery gene
Locus tag   SYNPCCP_RS10735 Genome accession   NC_017039
Coordinates   2269407..2272694 (+) Length   1095 a.a.
NCBI ID   WP_010873252.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 6803 substr. PCC-P     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2264407..2277694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SYNPCCP_RS10715 (SYNPCCP_2053) - 2264676..2265170 (-) 495 WP_010873248.1 DUF1830 domain-containing protein -
  SYNPCCP_RS10720 (SYNPCCP_2054) - 2265316..2266911 (+) 1596 WP_010873249.1 photosystem II high light acclimation radical SAM protein -
  SYNPCCP_RS10725 (SYNPCCP_2055) - 2266952..2267989 (-) 1038 WP_010873250.1 RNA polymerase sigma factor, RpoD/SigA family -
  SYNPCCP_RS10730 (SYNPCCP_2056) era 2268450..2269397 (+) 948 WP_010873251.1 GTPase Era -
  SYNPCCP_RS10735 (SYNPCCP_2057) pilL-C 2269407..2272694 (+) 3288 WP_010873252.1 hybrid sensor histidine kinase/response regulator Machinery gene
  SYNPCCP_RS10740 (SYNPCCP_2058) - 2272694..2275822 (+) 3129 WP_010873253.1 alpha-mannosidase -
  SYNPCCP_RS10745 (SYNPCCP_2059) - 2275815..2276699 (+) 885 WP_010873254.1 ABC transporter permease -
  SYNPCCP_RS10750 (SYNPCCP_2060) - 2276747..2277232 (+) 486 WP_010873255.1 MEKHLA domain-containing protein -

Sequence

Protein


Download         Length: 1095 a.a.        Molecular weight: 120557.37 Da        Isoelectric Point: 4.3786

>NTDB_id=44363 SYNPCCP_RS10735 WP_010873252.1 2269407..2272694(+) (pilL-C) [Synechocystis sp. PCC 6803 substr. PCC-P]
MTSDPNPAQAFENWFEEEEGDDAFTSLIAGEETNSGIEELDFGDLFEGEPTVIQGEGFGSPSSGEEDPPVRMTLDFNSPE
AELDALFTDEDAPTTAIDPFESSSWLEIDQMMEADPLASIPETNAPAYQTAGGLDDNDLAELQDLLGVGDVEPAITNPGL
HSFAGADRVTPLTNEVLLFAAIDDLDGLINAPVLDEEFSFTELETLIDTPAPKSFATISHPFRLPVAMEEDEDEFKDLEA
LLEQADSSLGGGIAGMGGARLPARPRQVKSRSFEQTMRVPIKQLDNLSNLIGELVVKRNRLEQDQERLRQFLDNLLNQAQ
NLSDVGGRMQDLYERTLLEGALLASRSTNSRHHSSKTTYPDARITASSSSTMNDQPLDALEMDRFTGFHLLSQEMIELIV
RVRESASDIQYLVDETDQVARTLRQVTTQLQEGMTKSRMVPFTQTADRLPRAIREVSMKLNKKVNLEVEGGDVLIDKMIL
EHLYNPMTHLVNNAITHGIETPAERQKLGKSPEGHLAVRAFLQGNQTLITVSDDGAGINTEMVKQKAVEKGLISRMEAQS
LSQSEVYDLLFHAGFSTKDTADDFAGRGVGLDVVRTSLIDIRGAINIESTVGKGTTFTIRLPLTLSICKALCCLSDRARI
AFPMDGVEDTRDYLPKDIVTDEDGQKCVKYGKEALLLPLYPLKDLLNYNRQLSRGSVYGGKQEEDVVRVIIARGSSGNLL
ALQIDQVLGEEEIVIKQIEGPIPKPPGIAGATVRGDGSIMPIADVLELIEIAQGRLRTDSSGGLWRKTLTPTVNEVHMDP
TVLIVDDSITVRELLSLSFKKAGFRVEQARDGQEAWDQLKSGLPCDLVFCDIEMPRKNGLELLSELQADEELSSIPVALL
TSRGADRHRKVAAKLGATGYFTKPYTEKDILDAANRMLNGEVLLPGSTRKTNSILSRFKKARGNFSEEAPTIVRSNPGTL
RSTVLIIDDSVMVREMLSMTFKKADYHTETARDGQDAWEKLKSGLPCDLILCDIEMPRMNGLELLERIQEDPNLSRIPVA
MITSRGAQKMQRMAAEKGAKGYFVKPYIEETLLEASQRLIRGEVLLDLAALSADE

Nucleotide


Download         Length: 3288 bp        

>NTDB_id=44363 SYNPCCP_RS10735 WP_010873252.1 2269407..2272694(+) (pilL-C) [Synechocystis sp. PCC 6803 substr. PCC-P]
ATGACTAGCGATCCCAATCCAGCCCAGGCATTTGAAAATTGGTTTGAGGAGGAAGAGGGGGATGACGCCTTTACTTCCCT
CATTGCCGGTGAGGAGACTAACAGTGGGATTGAAGAACTGGATTTTGGCGATTTATTTGAGGGAGAACCCACCGTCATCC
AGGGTGAAGGGTTTGGCTCGCCGTCCTCTGGAGAGGAAGATCCGCCGGTCCGCATGACCCTAGATTTTAATTCCCCGGAA
GCGGAACTAGACGCTCTCTTTACCGATGAGGATGCCCCCACAACGGCGATCGATCCCTTTGAAAGCTCCAGTTGGCTAGA
AATCGACCAGATGATGGAAGCTGATCCCCTGGCTTCCATTCCTGAGACCAATGCCCCCGCTTACCAGACCGCTGGTGGCC
TAGATGACAATGACCTAGCCGAATTGCAGGATTTACTAGGAGTAGGGGACGTCGAGCCCGCCATTACCAACCCTGGTTTG
CACTCCTTTGCTGGGGCTGATCGGGTAACTCCATTGACAAATGAGGTCCTGCTTTTTGCGGCGATCGATGACTTAGACGG
ATTGATTAATGCCCCTGTCCTGGACGAAGAATTTTCCTTTACCGAACTAGAGACTTTAATCGATACCCCAGCCCCAAAAT
CTTTTGCCACCATCAGCCATCCTTTTCGTTTACCGGTGGCTATGGAGGAAGACGAGGATGAATTCAAAGACTTAGAAGCA
TTATTAGAGCAAGCGGATAGCAGTCTGGGGGGGGGCATAGCCGGCATGGGAGGGGCTCGGCTGCCCGCTCGACCTAGGCA
GGTTAAATCCCGTAGTTTTGAGCAAACTATGCGGGTGCCCATCAAACAACTTGACAACCTCAGTAACCTGATCGGGGAGC
TAGTGGTCAAACGGAATCGCCTTGAACAGGATCAGGAGCGTTTACGACAGTTTTTGGATAATCTGCTCAACCAAGCCCAA
AACCTCAGCGATGTGGGGGGGCGGATGCAGGATTTATACGAAAGAACTTTGTTGGAAGGGGCCCTTTTAGCCAGCCGCAG
CACCAACAGCCGTCACCACTCCTCGAAAACCACCTACCCCGATGCCAGGATCACGGCCTCTAGTTCCTCGACCATGAATG
ACCAGCCTTTGGATGCGCTGGAAATGGATCGATTTACCGGATTTCACCTGCTTTCCCAGGAGATGATCGAGTTAATTGTG
CGGGTGCGGGAATCTGCGTCGGATATTCAGTACTTGGTGGACGAGACAGATCAGGTGGCCCGAACCCTCCGGCAGGTGAC
TACGCAGTTACAGGAGGGAATGACCAAATCTCGCATGGTGCCCTTTACCCAAACCGCCGATCGCCTGCCACGGGCCATCC
GGGAAGTGTCCATGAAATTGAATAAAAAAGTCAACCTAGAGGTGGAAGGGGGCGACGTGCTCATCGACAAAATGATTTTG
GAGCACCTCTACAATCCCATGACCCATTTGGTTAACAATGCCATCACCCACGGTATTGAAACCCCAGCAGAACGACAAAA
ATTAGGCAAATCCCCCGAAGGGCATCTAGCAGTGCGGGCCTTTCTCCAGGGCAACCAAACCCTGATCACCGTCTCCGATG
ATGGAGCAGGGATCAACACGGAAATGGTTAAACAAAAAGCAGTGGAAAAAGGGCTCATTAGCCGTATGGAGGCCCAGAGC
CTATCCCAGTCAGAGGTTTATGACCTCCTGTTCCATGCTGGTTTTAGCACCAAGGACACAGCGGACGACTTTGCCGGTAG
GGGAGTAGGTCTTGACGTGGTACGCACCAGTCTGATCGATATTCGCGGAGCCATCAACATTGAATCCACTGTGGGCAAGG
GCACCACTTTTACCATTCGTTTGCCCCTCACCCTGAGCATTTGCAAAGCCCTTTGTTGCCTGAGCGATCGGGCTCGCATC
GCCTTTCCCATGGACGGGGTGGAAGATACCAGGGACTATTTGCCCAAAGACATTGTTACCGATGAGGATGGTCAAAAGTG
CGTTAAATACGGCAAGGAAGCCCTGCTTTTACCGCTCTATCCCCTCAAAGATTTGCTCAACTATAACCGGCAATTAAGCC
GGGGTAGTGTGTATGGGGGCAAGCAAGAGGAAGATGTGGTGCGGGTCATCATTGCCCGGGGGAGTTCTGGTAACCTGTTA
GCCCTCCAGATAGACCAGGTATTAGGGGAAGAAGAAATTGTTATCAAGCAAATTGAAGGGCCCATTCCCAAACCTCCAGG
CATTGCCGGGGCTACCGTGCGGGGGGATGGTAGCATCATGCCCATTGCCGATGTTTTGGAACTGATCGAAATTGCCCAGG
GTCGTCTCCGCACTGACAGCAGTGGTGGACTATGGCGCAAAACCCTGACCCCCACGGTCAATGAAGTCCACATGGACCCC
ACTGTGCTAATTGTGGACGACTCCATCACGGTGCGGGAATTGCTCTCCCTCAGTTTCAAAAAAGCTGGTTTCCGGGTAGA
ACAGGCTAGGGATGGACAGGAAGCCTGGGATCAACTCAAGTCTGGTCTGCCCTGTGACTTGGTCTTCTGTGACATTGAAA
TGCCCCGCAAAAATGGCTTGGAATTGTTATCGGAACTGCAAGCAGACGAAGAACTATCTTCCATTCCAGTGGCCTTACTC
ACTTCCAGGGGAGCCGATCGCCATCGTAAAGTGGCGGCCAAGCTGGGGGCAACGGGCTATTTCACCAAGCCCTATACAGA
AAAAGACATTTTGGACGCGGCCAACCGGATGTTGAATGGGGAGGTGTTACTCCCCGGCAGTACCCGCAAAACTAATTCCA
TTCTTTCTCGCTTCAAAAAAGCCCGAGGCAACTTCTCCGAAGAAGCTCCCACCATTGTGAGAAGTAATCCAGGTACCCTA
CGTTCGACGGTGTTAATTATTGATGACTCGGTGATGGTGCGGGAAATGCTTTCTATGACCTTTAAAAAAGCCGATTACCA
TACAGAAACTGCTCGGGATGGCCAGGATGCCTGGGAAAAACTCAAGTCTGGCTTACCCTGTGATTTGATTCTCTGTGACA
TTGAAATGCCCCGCATGAACGGTCTGGAATTATTGGAGCGCATTCAAGAAGATCCCAACCTTTCCCGTATTCCAGTGGCC
ATGATTACCTCCCGGGGAGCACAAAAAATGCAGCGCATGGCAGCAGAAAAAGGCGCCAAGGGATACTTTGTGAAGCCCTA
CATTGAGGAAACTTTATTGGAAGCCAGTCAAAGGTTGATAAGGGGAGAAGTGTTGCTAGATTTGGCCGCTCTAAGTGCAG
ACGAGTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(487-624)

Signal transducing histidine kinase, homodimeric domain (H-kinase_dim)

(275-331)

CheW-like domain (CheW)

(630-770)

Response regulator receiver domain (Response_reg)

(964-1075)

Response regulator receiver domain (Response_reg)

(802-914)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL-C Synechocystis sp. PCC 6803

100

100

1

Multiple sequence alignment