Detailed information NTG0443623

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: IUJ43_RS01940
• Genome accession: NZ_CP064391
• Coordinates: 417877..418881 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PartH-Paeruginosa-RM8376
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 412877..423881

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IUJ43_RS01910 (IUJ43_01900)	fghA	412969..413820 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
IUJ43_RS01915 (IUJ43_01905)	ispF	413891..414364 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
IUJ43_RS01920 (IUJ43_01910)	truD	414361..415428 (+)	1068	WP_003113870.1	tRNA pseudouridine(13) synthase TruD	-
IUJ43_RS01925 (IUJ43_01915)	surE	415416..416165 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
IUJ43_RS01930 (IUJ43_01920)	-	416198..416833 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
IUJ43_RS01935 (IUJ43_01925)	-	416879..417772 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
IUJ43_RS01940 (IUJ43_01930)	rpoS	417877..418881 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
IUJ43_RS01945 (IUJ43_01935)	fdxA	419308..419631 (-)	324	WP_003092272.1	ferredoxin FdxA	-
IUJ43_RS01950 (IUJ43_01940)	mutS	419698..422265 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
IUJ43_RS01955 (IUJ43_01945)	-	422391..423398 (-)	1008	WP_003113874.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=443623 IUJ43_RS01940 WP_003113871.1 417877..418881(+) (rpoS) [Pseudomonas aeruginosa strain PartH-Paeruginosa-RM8376]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=443623 IUJ43_RS01940 WP_003113871.1 417877..418881(+) (rpoS) [Pseudomonas aeruginosa strain PartH-Paeruginosa-RM8376]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATTCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653