Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HL650_RS03380 Genome accession   NZ_CP053228
Coordinates   693875..695251 (+) Length   458 a.a.
NCBI ID   WP_065542403.1    Uniprot ID   A0A1C7I989
Organism   Blautia pseudococcoides strain SCSK     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 688875..700251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HL650_RS03360 (HL650_03360) purD 688980..690254 (+) 1275 WP_171285296.1 phosphoribosylamine--glycine ligase -
  HL650_RS03365 (HL650_03365) - 690392..690760 (+) 369 WP_065542406.1 GntR family transcriptional regulator -
  HL650_RS03370 (HL650_03370) - 690775..693237 (+) 2463 WP_171285297.1 ATP-dependent Clp protease ATP-binding subunit -
  HL650_RS03375 (HL650_03375) - 693361..693774 (+) 414 WP_065542404.1 endosialidase -
  HL650_RS03380 (HL650_03380) radA 693875..695251 (+) 1377 WP_065542403.1 DNA repair protein RadA Machinery gene
  HL650_RS03385 (HL650_03385) - 695301..696227 (+) 927 WP_065542402.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49534.30 Da        Isoelectric Point: 7.7642

>NTDB_id=443619 HL650_RS03380 WP_065542403.1 693875..695251(+) (radA) [Blautia pseudococcoides strain SCSK]
MAKAKKTVFFCQNCGYESAKWMGQCPGCREWNSFVEETVFQGTKKSPGQAAGSAAGGRAGKPMMLSQIDIREDNRIKTSM
EELDRVLGGGVVQGSMVLVGGDPGIGKSTLLLQVCKLLSDAGHKILYISGEESLKQIKMRAQRIGEFNENLRLLCETNLE
IISTTIENEKPEAVIIDSIQTMYHEEVSSAPGSVSQVRESTGILMKIAKGMGISVFIVGHVTKDGSVAGPRVLEHMVDTV
LYFEGDRHASYRILRSVKNRFGSTNEIGVFEMQECGLVEVKNPSQVMLNGRPTDASGTVVVCSLEGTRPILIEIQALVTK
TNFGLPRRTSVGIDYNRVNLLMAVLEKRAGLALGNCDAYVNLAGGMKLGEPAIDLGIVAAIISSYRNRTVDPDTLIFGEV
GLSGEVRGVSQAQQRVKEAEKMGFTTCIMPKANLEGLQGKFKISLIGVGNIKDVMGYI

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=443619 HL650_RS03380 WP_065542403.1 693875..695251(+) (radA) [Blautia pseudococcoides strain SCSK]
ATGGCAAAGGCGAAAAAGACAGTTTTCTTCTGTCAGAACTGTGGATATGAGTCTGCAAAATGGATGGGGCAGTGTCCCGG
ATGCCGGGAGTGGAATTCATTTGTGGAGGAGACTGTTTTCCAGGGGACTAAAAAAAGCCCGGGACAGGCGGCAGGAAGCG
CAGCGGGCGGCCGTGCAGGCAAACCTATGATGCTCTCTCAAATAGATATCAGGGAGGATAACCGGATCAAGACCAGTATG
GAGGAATTAGACCGGGTTCTGGGCGGCGGTGTGGTCCAGGGCTCTATGGTGCTGGTTGGGGGAGATCCCGGAATTGGAAA
ATCCACCCTTCTTCTGCAGGTATGTAAACTGCTTTCTGATGCAGGTCATAAAATTCTATATATCTCAGGAGAGGAATCCC
TGAAGCAGATTAAAATGCGGGCGCAGCGTATCGGGGAATTCAATGAGAATCTGCGCCTTCTCTGCGAGACGAACCTGGAG
ATCATCAGCACAACCATAGAAAATGAAAAGCCGGAGGCGGTCATTATCGACTCTATCCAGACCATGTATCATGAGGAGGT
GTCCTCCGCACCGGGCAGTGTTTCCCAGGTCCGGGAATCCACAGGTATCTTGATGAAGATTGCAAAAGGAATGGGAATAT
CGGTCTTTATTGTAGGCCACGTGACCAAGGATGGAAGTGTGGCAGGCCCCCGTGTACTGGAACATATGGTGGATACGGTA
CTGTATTTTGAGGGGGACAGACATGCGTCCTACAGAATCTTAAGAAGTGTGAAGAATCGTTTTGGCTCCACCAATGAAAT
CGGTGTATTTGAGATGCAGGAGTGCGGGCTTGTGGAGGTGAAAAACCCCTCTCAGGTTATGTTAAACGGCCGTCCTACGG
ATGCGTCAGGGACTGTGGTGGTTTGTTCTTTAGAGGGGACGCGTCCGATATTGATTGAAATCCAGGCTTTGGTCACAAAG
ACTAATTTCGGTTTGCCGAGGAGAACCTCTGTCGGTATTGATTATAACCGGGTTAATTTACTTATGGCAGTTTTGGAGAA
GCGTGCAGGCTTGGCACTGGGAAACTGCGATGCGTACGTCAACCTTGCGGGCGGTATGAAGCTGGGGGAACCGGCTATTG
ATTTGGGCATTGTGGCTGCCATTATATCCAGCTATAGGAACAGAACGGTGGACCCGGATACCTTGATTTTTGGTGAAGTG
GGTCTGTCCGGTGAGGTGCGGGGAGTCAGCCAGGCACAGCAGAGGGTGAAAGAGGCGGAGAAAATGGGATTTACAACCTG
CATAATGCCGAAAGCAAATCTGGAAGGATTGCAGGGAAAATTCAAAATCTCCTTGATCGGAGTAGGTAATATTAAAGATG
TGATGGGATATATATGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-36)

Subunit ChlI of Mg-chelatase (ChlI)

(349-433)

AAA domain (AAA_25)

(72-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C7I989

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

58.643

99.782

0.585
  radA Streptococcus mitis NCTC 12261

56.264

99.345

0.559
  radA Streptococcus mitis SK321

56.044

99.345

0.557
  radA Streptococcus pneumoniae Rx1

56.044

99.345

0.557
  radA Streptococcus pneumoniae D39

56.044

99.345

0.557
  radA Streptococcus pneumoniae R6

56.044

99.345

0.557
  radA Streptococcus pneumoniae TIGR4

56.044

99.345

0.557