Detailed information NTG0443604

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: IUJ40_RS10475
• Genome accession: NZ_CP064389
• Coordinates: 2060554..2061636 (-)
• Length: 360 a.a.
• NCBI ID: WP_001548033.1
• Uniprot ID: A0A0H2XJ41
• Organism: Staphylococcus aureus strain PartE-Saureus-RM8376
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2055554..2066636

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IUJ40_RS10455 (IUJ40_10450)	-	2056163..2056267 (-)	105	WP_001790092.1	hypothetical protein	-
IUJ40_RS10460 (IUJ40_10455)	secA	2056309..2058840 (-)	2532	WP_000506531.1	preprotein translocase subunit SecA	-
IUJ40_RS10465 (IUJ40_10460)	hpf	2059254..2059826 (-)	573	WP_000617735.1	ribosome hibernation-promoting factor, HPF/YfiA family	-
IUJ40_RS10470 (IUJ40_10465)	-	2059887..2060561 (-)	675	WP_001057965.1	ComF family protein	-
IUJ40_RS10475 (IUJ40_10470)	comFA	2060554..2061636 (-)	1083	WP_001548033.1	DEAD/DEAH box helicase	Machinery gene
IUJ40_RS10480 (IUJ40_10475)	fakB1	2062000..2062866 (-)	867	WP_000686342.1	fatty acid kinase binding subunit FakB1	-
IUJ40_RS10485 (IUJ40_10480)	-	2063010..2063651 (+)	642	WP_000192947.1	YigZ family protein	-
IUJ40_RS10490 (IUJ40_10485)	-	2063821..2064876 (-)	1056	WP_000258151.1	glycosyltransferase family 4 protein	-
IUJ40_RS10495 (IUJ40_10490)	-	2065194..2066264 (+)	1071	WP_000460983.1	GGDEF domain-containing protein	-

Sequence

Protein

• Length: 360 a.a.
• Molecular weight: 42111.65 Da
• Isoelectric Point: 9.8307

>NTDB_id=443604 IUJ40_RS10475 WP_001548033.1 2060554..2061636(-) (comFA) [Staphylococcus aureus strain PartE-Saureus-RM8376]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRKRQTILLYAVTGAGKTEMMFQGIQYARIQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSRQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKNLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNKKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQRMNKLALKRGWIDE

Nucleotide

• Length: 1083 bp

>NTDB_id=443604 IUJ40_RS10475 WP_001548033.1 2060554..2061636(-) (comFA) [Staphylococcus aureus strain PartE-Saureus-RM8376]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGAATACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGACAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAATTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACAATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGTTATTTCAAACTTAATAATAAGAAGATTCAGA
AAATGTTATACCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATACGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGGGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAG
GATGAACAAATTAGCATTAAAAAGAGGCTGGATTGATGAATAA

Domains

Predicted by InterProScan.

• Helicase conserved C-terminal domain (Helicase_C) (215-318)

• Type III restriction enzyme, res subunit (ResIII) (25-173)

3D structure

• AlphaFold DB: A0A0H2XJ41

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Bacillus subtilis subsp. subtilis str. 168	38.938	94.167	0.367