Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   HLG75_RS01590 Genome accession   NZ_CP053215
Coordinates   330590..331117 (+) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain DT0544C     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 325590..336117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLG75_RS01575 (HLG75_01575) pilM 328143..329201 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  HLG75_RS01580 (HLG75_01580) pilN 329201..329842 (+) 642 WP_000201223.1 PilN domain-containing protein Machinery gene
  HLG75_RS01585 (HLG75_01585) pilO 329839..330579 (+) 741 WP_000076102.1 type 4a pilus biogenesis protein PilO Machinery gene
  HLG75_RS01590 (HLG75_01590) pilP 330590..331117 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  HLG75_RS01595 (HLG75_01595) pilQ 331185..333350 (+) 2166 WP_001017031.1 type IV pilus secretin PilQ Machinery gene
  HLG75_RS01600 (HLG75_01600) aroK 333362..333931 (+) 570 WP_000643712.1 shikimate kinase AroK -
  HLG75_RS01605 (HLG75_01605) aroB 333960..335042 (+) 1083 WP_001193998.1 3-dehydroquinate synthase -
  HLG75_RS01610 (HLG75_01610) - 335058..335933 (+) 876 WP_109426703.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=443519 HLG75_RS01590 WP_000695065.1 330590..331117(+) (pilP) [Acinetobacter baumannii strain DT0544C]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=443519 HLG75_RS01590 WP_000695065.1 330590..331117(+) (pilP) [Acinetobacter baumannii strain DT0544C]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCTGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCCCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCTTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCAGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACATTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714