Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilA5   Type   Machinery gene
Locus tag   SYNGTI_RS10405 Genome accession   NC_017038
Coordinates   2218890..2219348 (+) Length   152 a.a.
NCBI ID   WP_020862233.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 6803 substr. GT-I     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2213890..2224348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SYNGTI_RS10390 (SYNGTI_2006) - 2214193..2216892 (-) 2700 WP_010873202.1 chloride channel protein -
  SYNGTI_RS10395 (SYNGTI_2007) - 2217007..2217510 (+) 504 WP_020862235.1 hypothetical protein -
  SYNGTI_RS10400 (SYNGTI_2008) - 2217458..2218678 (+) 1221 WP_010873204.1 DUF58 domain-containing protein -
  SYNGTI_RS10405 (SYNGTI_2009) pilA/pilA5 2218890..2219348 (+) 459 WP_020862233.1 hypothetical protein Machinery gene
  SYNGTI_RS16910 (SYNGTI_2010) - 2219371..2219916 (+) 546 WP_231848034.1 Tfp pilus assembly protein FimT/FimU -
  SYNGTI_RS10415 (SYNGTI_2011) - 2220033..2220593 (+) 561 WP_010873207.1 Tfp pilus assembly protein FimT/FimU -
  SYNGTI_RS16915 (SYNGTI_2012) - 2220615..2221532 (+) 918 WP_010873208.1 PilW family protein -
  SYNGTI_RS10420 (SYNGTI_2013) - 2221590..2222285 (+) 696 WP_010873209.1 alpha/beta fold hydrolase -
  SYNGTI_RS10425 (SYNGTI_2014) - 2222506..2222796 (-) 291 WP_223211274.1 hypothetical protein -
  SYNGTI_RS10430 (SYNGTI_2015) - 2222995..2223426 (-) 432 WP_010873211.1 hypothetical protein -
  SYNGTI_RS10435 (SYNGTI_2016) - 2223483..2224247 (-) 765 WP_010873212.1 IS5 family transposase -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 16141.38 Da        Isoelectric Point: 4.3321

>NTDB_id=44340 SYNGTI_RS10405 WP_020862233.1 2218890..2219348(+) (pilA/pilA5) [Synechocystis sp. PCC 6803 substr. GT-I]
MFEVLIALMISFLFLTGTLNAMVMATVMRVKAEREAQAGYWIKEDLEQVRALAANFNPATGNGCPTSVGETFRDANNSAD
ADPNNDGLASLPVPANKSIVGVTAAITRTPGVSNNVLTLSYRVRNTNVTDNDMATLATLYTEVLPAAALACE

Nucleotide


Download         Length: 459 bp        

>NTDB_id=44340 SYNGTI_RS10405 WP_020862233.1 2218890..2219348(+) (pilA/pilA5) [Synechocystis sp. PCC 6803 substr. GT-I]
ATGTTCGAGGTGCTGATTGCCTTGATGATTTCCTTTCTATTTCTGACAGGAACCCTGAATGCCATGGTAATGGCAACGGT
AATGCGGGTTAAAGCGGAAAGAGAGGCCCAAGCTGGCTATTGGATAAAAGAAGATTTAGAGCAAGTTCGGGCATTAGCTG
CAAACTTCAATCCGGCAACTGGTAATGGATGCCCTACAAGTGTGGGTGAAACTTTTCGAGATGCAAACAATAGTGCTGAC
GCCGATCCTAACAATGATGGACTAGCGAGCTTACCAGTTCCTGCCAACAAATCAATTGTCGGTGTAACAGCCGCTATTAC
TAGAACACCAGGGGTATCTAATAACGTTTTAACTCTTAGCTATCGTGTCAGGAACACCAATGTCACCGACAATGATATGG
CTACCCTTGCAACACTTTACACCGAGGTTCTTCCTGCTGCCGCTCTTGCTTGTGAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilA5 Synechocystis sp. PCC 6803

100

100

1

Multiple sequence alignment