Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HK406_RS07925 Genome accession   NZ_CP053190
Coordinates   1656733..1657359 (+) Length   208 a.a.
NCBI ID   WP_109948749.1    Uniprot ID   -
Organism   Enterobacter hormaechei strain EGYMCRVIM     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1651733..1662359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HK406_RS07905 - 1652132..1653892 (-) 1761 WP_045894109.1 Lon protease family protein -
  HK406_RS07910 matP 1654079..1654531 (+) 453 WP_003858158.1 macrodomain Ter protein MatP -
  HK406_RS07915 ompA 1654597..1655649 (-) 1053 WP_017694761.1 porin OmpA -
  HK406_RS07920 sulA 1656006..1656515 (-) 510 WP_109948754.1 SOS-induced cell division inhibitor SulA -
  HK406_RS07925 sxy/tfoX 1656733..1657359 (+) 627 WP_109948749.1 TfoX/Sxy family DNA transformation protein Regulator
  HK406_RS07930 yccS 1657316..1659478 (-) 2163 WP_109948748.1 YccS family putative transporter -
  HK406_RS07935 - 1659497..1659943 (-) 447 WP_003858149.1 YccF domain-containing protein -
  HK406_RS07940 helD 1660066..1662120 (+) 2055 WP_109948747.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23954.52 Da        Isoelectric Point: 9.4592

>NTDB_id=443398 HK406_RS07925 WP_109948749.1 1656733..1657359(+) (sxy/tfoX) [Enterobacter hormaechei strain EGYMCRVIM]
MKKISYERIYQSQEYLSPLGEIHHRALVGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELTEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=443398 HK406_RS07925 WP_109948749.1 1656733..1657359(+) (sxy/tfoX) [Enterobacter hormaechei strain EGYMCRVIM]
ATGAAAAAGATATCTTATGAGCGGATTTATCAATCTCAAGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GGTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCTTCCTCTTTTCTGACCCTGATGAAACGAGGACGCCCAGTGCTGCTTAAT
TACTACCGTGTGGACGAAGGTCTGTGGCAAAACAGGGAAAAACTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAACCGGCTTAAAGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTAAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCGATTGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTACGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.416

97.115

0.567