Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   IUJ36_RS12880 Genome accession   NZ_CP064383
Coordinates   2442875..2444302 (+) Length   475 a.a.
NCBI ID   WP_000980540.1    Uniprot ID   A0A0H3JGG6
Organism   Escherichia coli O157:H7 strain PartA-EcoliO157H7-RM8376     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2437875..2449302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ36_RS12840 (IUJ36_12690) yeeW 2438058..2438252 (+) 195 WP_000988600.1 DUF5983 family protein -
  IUJ36_RS12845 (IUJ36_12695) - 2438298..2438378 (+) 81 Protein_2525 hypothetical protein -
  IUJ36_RS28425 yoeF 2438693..2439049 (+) 357 WP_001303565.1 EutP/PduV family microcompartment system protein -
  IUJ36_RS12860 (IUJ36_12710) tmaR 2439150..2439479 (-) 330 WP_000450409.1 DUF496 family protein -
  IUJ36_RS12865 (IUJ36_12715) yeeA 2439651..2440709 (-) 1059 WP_001202488.1 FUSC family protein -
  IUJ36_RS12870 (IUJ36_12720) sbmC 2440908..2441381 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  IUJ36_RS12875 (IUJ36_12725) dacD 2441500..2442666 (-) 1167 WP_001303036.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  IUJ36_RS12880 (IUJ36_12730) sbcB 2442875..2444302 (+) 1428 WP_000980540.1 exodeoxyribonuclease I Machinery gene
  IUJ36_RS12885 (IUJ36_12735) tsuB 2444345..2444572 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  IUJ36_RS12890 (IUJ36_12740) tsuA 2444586..2445644 (-) 1059 WP_000492327.1 thiosulfate utilization transporter TsuA/YeeE -
  IUJ36_RS12895 (IUJ36_12745) plaP 2445823..2447181 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  IUJ36_RS12900 (IUJ36_12750) yoeI 2447171..2447233 (-) 63 WP_010723108.1 membrane protein YoeI -
  IUJ36_RS12905 (IUJ36_12755) yeeY 2447448..2448377 (-) 930 WP_000803334.1 LysR substrate-binding domain-containing protein -
  IUJ36_RS12910 (IUJ36_12760) yeeZ 2448423..2449247 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54500.77 Da        Isoelectric Point: 5.3498

>NTDB_id=443391 IUJ36_RS12880 WP_000980540.1 2442875..2444302(+) (sbcB) [Escherichia coli O157:H7 strain PartA-EcoliO157H7-RM8376]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=443391 IUJ36_RS12880 WP_000980540.1 2442875..2444302(+) (sbcB) [Escherichia coli O157:H7 strain PartA-EcoliO157H7-RM8376]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGCTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAACCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
TATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTACATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3JGG6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581