Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   HLK68_RS12310 Genome accession   NZ_CP053187
Coordinates   2529987..2531792 (+) Length   601 a.a.
NCBI ID   WP_006785093.1    Uniprot ID   A0A9X4XCW3
Organism   Turicibacter sanguinis strain MOL361     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2524987..2536792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLK68_RS12280 (HLK68_12300) - 2525338..2525922 (-) 585 WP_006785087.1 manganese catalase family protein -
  HLK68_RS12285 (HLK68_12305) - 2525934..2526182 (-) 249 WP_055166421.1 spore coat protein CotJB -
  HLK68_RS12290 (HLK68_12310) - 2526175..2526387 (-) 213 WP_055166418.1 spore coat associated protein CotJA -
  HLK68_RS12295 (HLK68_12315) - 2526749..2527006 (+) 258 WP_006785090.1 PTS system mannose/fructose/sorbose family transporter subunit IID -
  HLK68_RS12300 (HLK68_12320) - 2527356..2528009 (+) 654 WP_009607324.1 hypothetical protein -
  HLK68_RS12305 (HLK68_12325) rcrP 2528234..2529994 (+) 1761 WP_132942619.1 ABC transporter ATP-binding protein Regulator
  HLK68_RS12310 (HLK68_12330) rcrQ 2529987..2531792 (+) 1806 WP_006785093.1 ABC transporter ATP-binding protein Regulator
  HLK68_RS12315 (HLK68_12335) - 2531915..2532547 (-) 633 WP_006785094.1 DUF4358 domain-containing protein -
  HLK68_RS12320 (HLK68_12340) - 2532851..2534830 (+) 1980 WP_238843599.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 67128.93 Da        Isoelectric Point: 6.2006

>NTDB_id=443377 HLK68_RS12310 WP_006785093.1 2529987..2531792(+) (rcrQ) [Turicibacter sanguinis strain MOL361]
MSRPNRGPMAGAGAPTEKAKDTKKSVKKLLLFCQPHYLLIAFALIFSIVGTILTLIGPDKLSEVTDLITAGLMTGIDLDA
VEDLCLLLVYMYGASFILSYFQGFIMNTVTQKVAKSLRTQISEKINRLPLRYFDSTSYGDILSRVTNDVDSIAQTLNQSV
GNLVSAITLFFGSLFMMFITNAWMAITAILSTVIGFILMMFIMSKSQKYFIRQQRDLGLMNGHVEEIYSGHNIVKVYNDE
AKAKAKFDEINEDLYESVWRSQFLSGLMMPLMSFIGNFGYVAVCIVGASLAMNEVITFGVIVAFMVYIRLFTQPLSQIAQ
AMTSLQQTAAASERVFEFLEEPEMQQENGKINDFTVSKGEVEFKHVHFGYHADRTIINDFSVTTKPGQKVAIVGPTGAGK
TTMVNLLMKFYEANSGEILIDGMPINQLTRHNVHDLFGMVLQDTWIFEGTIRENIVYSMKNVSDEEVEKACKAVGIHHFI
KTLPKGYETILNDKANLSAGQKQLITIARAMVENAPLLILDEATSSVDTRTEILIQEAMDKLMRGRTSFVIAHRLSTIKN
ANLILVMNHGDIIESGTHEQLMKQNGFYAELYNSQFEKLAE

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=443377 HLK68_RS12310 WP_006785093.1 2529987..2531792(+) (rcrQ) [Turicibacter sanguinis strain MOL361]
ATGAGTAGACCAAATCGCGGACCAATGGCAGGAGCAGGGGCTCCGACTGAGAAAGCAAAAGACACGAAAAAAAGCGTCAA
AAAACTTCTTCTATTTTGTCAACCTCATTATCTTTTAATAGCTTTCGCCCTTATTTTTTCGATTGTTGGAACCATTCTTA
CCCTGATTGGACCTGACAAATTAAGTGAAGTCACAGACCTTATTACAGCGGGTTTAATGACGGGAATTGATCTAGACGCT
GTCGAAGATCTTTGCTTACTTCTTGTGTATATGTACGGAGCATCCTTCATTTTATCTTATTTTCAAGGATTTATTATGAA
TACAGTCACACAAAAAGTGGCAAAGAGTTTAAGAACACAAATTTCAGAAAAAATCAATCGGTTACCACTCAGATACTTTG
ATTCAACAAGTTATGGCGATATTTTAAGTCGTGTGACAAATGATGTCGATAGCATTGCGCAAACTTTGAATCAAAGCGTG
GGGAATTTAGTATCTGCCATCACCTTATTTTTCGGCTCACTTTTCATGATGTTTATCACCAATGCATGGATGGCAATCAC
CGCCATTCTTTCAACCGTGATTGGTTTTATCTTAATGATGTTTATTATGTCAAAATCACAAAAATATTTTATTAGACAAC
AACGTGATTTAGGATTAATGAATGGACATGTCGAAGAAATCTATTCAGGACACAACATTGTCAAAGTGTATAATGATGAG
GCAAAAGCGAAAGCAAAATTTGATGAGATTAATGAGGACTTATACGAAAGTGTTTGGCGTTCTCAATTTTTATCAGGATT
AATGATGCCACTGATGAGTTTTATTGGAAATTTTGGTTATGTGGCAGTATGTATTGTAGGAGCCTCTTTGGCGATGAATG
AAGTCATCACCTTTGGGGTGATCGTAGCCTTTATGGTTTATATTCGTCTGTTTACTCAACCACTATCACAAATTGCACAA
GCAATGACGAGTTTACAACAGACGGCAGCGGCTAGTGAACGTGTTTTTGAGTTCTTAGAAGAACCTGAAATGCAACAAGA
AAATGGAAAAATCAATGATTTTACTGTTAGTAAAGGGGAAGTCGAGTTTAAACACGTTCATTTCGGTTATCACGCAGATC
GAACCATTATTAACGATTTTTCAGTGACAACAAAACCTGGACAAAAAGTTGCCATTGTGGGTCCAACCGGTGCTGGAAAA
ACGACGATGGTTAATTTACTTATGAAGTTCTATGAAGCGAATTCAGGTGAAATTTTAATTGATGGGATGCCAATTAATCA
GTTAACTCGTCACAATGTTCATGATTTGTTTGGGATGGTGCTTCAAGATACATGGATTTTTGAAGGAACGATTCGTGAAA
ACATCGTGTATTCCATGAAAAATGTGTCAGATGAAGAGGTGGAGAAGGCATGTAAGGCCGTTGGCATTCACCATTTTATT
AAAACATTACCGAAAGGATATGAGACGATTCTAAATGATAAGGCAAATTTATCAGCTGGACAAAAACAGCTAATCACGAT
TGCCCGTGCGATGGTTGAAAATGCACCCCTTCTTATTTTAGATGAAGCCACAAGTTCGGTTGATACCCGTACTGAAATTC
TCATTCAAGAGGCGATGGATAAATTAATGAGAGGACGCACCTCATTTGTGATTGCGCATCGCTTGTCCACTATTAAAAAT
GCCAATCTCATTTTAGTGATGAATCATGGAGACATTATTGAAAGTGGAACCCATGAACAACTCATGAAGCAAAACGGATT
CTATGCTGAGCTTTATAACAGCCAGTTTGAGAAATTAGCTGAGTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(41-315)

ABC transporter (ABC_tran)

(378-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

58.304

96.173

0.561