Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   HLK68_RS12305 Genome accession   NZ_CP053187
Coordinates   2528234..2529994 (+) Length   586 a.a.
NCBI ID   WP_132942619.1    Uniprot ID   -
Organism   Turicibacter sanguinis strain MOL361     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2523234..2534994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLK68_RS12270 (HLK68_12290) - 2523790..2523984 (+) 195 WP_006783412.1 hypothetical protein -
  HLK68_RS12275 (HLK68_12295) - 2524510..2525181 (-) 672 WP_006785086.1 manganese catalase family protein -
  HLK68_RS12280 (HLK68_12300) - 2525338..2525922 (-) 585 WP_006785087.1 manganese catalase family protein -
  HLK68_RS12285 (HLK68_12305) - 2525934..2526182 (-) 249 WP_055166421.1 spore coat protein CotJB -
  HLK68_RS12290 (HLK68_12310) - 2526175..2526387 (-) 213 WP_055166418.1 spore coat associated protein CotJA -
  HLK68_RS12295 (HLK68_12315) - 2526749..2527006 (+) 258 WP_006785090.1 PTS system mannose/fructose/sorbose family transporter subunit IID -
  HLK68_RS12300 (HLK68_12320) - 2527356..2528009 (+) 654 WP_009607324.1 hypothetical protein -
  HLK68_RS12305 (HLK68_12325) rcrP 2528234..2529994 (+) 1761 WP_132942619.1 ABC transporter ATP-binding protein Regulator
  HLK68_RS12310 (HLK68_12330) rcrQ 2529987..2531792 (+) 1806 WP_006785093.1 ABC transporter ATP-binding protein Regulator
  HLK68_RS12315 (HLK68_12335) - 2531915..2532547 (-) 633 WP_006785094.1 DUF4358 domain-containing protein -
  HLK68_RS12320 (HLK68_12340) - 2532851..2534830 (+) 1980 WP_238843599.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 65404.24 Da        Isoelectric Point: 7.3836

>NTDB_id=443376 HLK68_RS12305 WP_132942619.1 2528234..2529994(+) (rcrP) [Turicibacter sanguinis strain MOL361]
MGEIFKHLKKPEWGGMIVCLIFIVTQVWLDLKLPDYMSEITRLVQTEGSAMGDIWVQGSYMLFCALGSLISAVIVGFFAA
RIAATLSKRLRESLYTKVESFSMQEINQFSNASLITRSTNDITQVQMVFAMGLQVMIKAPILAVWAILKILGKNFEWSLV
TAGAVCVLLVMLSIILIFAVPKFKIIQGLTDNLNLVTRENLTGIRVVRAYNAENYQEEKFENANNILTRTHLFTGRIMAI
MGPGMTLIMSGLSLAIYWIGAYLIEAADRMDKIGLFSDMVVFSSYSIQVVMAFMMLTMIFIMLPRATVSAKRIMEVLNTP
LSIVDGTKQAPTDRVGEVEFRNVSFKYPDAEEYVIENISFKANRGETVAFIGSTGSGKSTLINLVPRFYDATEGEVLVDG
MNVKDYKQSDLNNKLGYVSQKAVLFAGTVESNIVFGDNGRQMAKLDQVKKAITIAQGRDFVEKMDRTYHSSIAQGGSNVS
GGQKQRLAIARAICRDPEIYIFDDSFSALDYKTDRVLRAALRQETKDATHLIVAQRIGTIIHADKIIVLDEGKMVGIGTH
QELLKNCEVYRQIAYSQLSKEELEHE

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=443376 HLK68_RS12305 WP_132942619.1 2528234..2529994(+) (rcrP) [Turicibacter sanguinis strain MOL361]
ATGGGGGAAATCTTTAAGCATTTAAAGAAACCAGAATGGGGAGGAATGATTGTTTGTCTCATTTTTATCGTGACACAAGT
TTGGTTAGATTTGAAGCTTCCCGATTATATGTCAGAGATTACGAGGCTAGTTCAAACAGAAGGTAGTGCCATGGGTGACA
TTTGGGTACAAGGCTCTTACATGCTATTTTGCGCACTAGGGAGTTTAATTTCTGCAGTCATTGTTGGTTTTTTCGCAGCA
CGTATTGCCGCAACATTATCAAAACGACTTCGAGAAAGTTTATACACCAAAGTAGAATCTTTTTCGATGCAAGAAATTAA
TCAATTTTCTAATGCTAGTTTAATTACACGTTCAACCAATGACATTACACAAGTTCAAATGGTATTTGCCATGGGGTTAC
AAGTGATGATTAAAGCACCCATTTTAGCTGTTTGGGCAATATTAAAAATTCTTGGAAAAAATTTCGAATGGTCGCTTGTA
ACTGCAGGAGCCGTCTGTGTGTTATTAGTTATGCTATCAATCATTTTAATTTTTGCTGTTCCAAAATTTAAAATAATTCA
AGGACTAACCGATAATCTCAACTTAGTCACACGAGAAAATTTAACGGGAATTCGAGTTGTCCGAGCTTATAATGCAGAAA
ATTATCAAGAAGAAAAATTCGAAAATGCAAATAACATTTTAACTCGTACTCATTTATTTACTGGACGTATTATGGCTATT
ATGGGACCTGGAATGACATTAATTATGAGTGGATTAAGTTTGGCTATCTACTGGATTGGAGCTTACCTGATTGAAGCTGC
GGATAGAATGGATAAAATTGGGTTATTTAGCGATATGGTCGTATTTTCATCTTATTCAATTCAAGTCGTCATGGCCTTTA
TGATGCTCACCATGATCTTTATCATGTTACCACGTGCCACTGTTTCAGCCAAACGAATTATGGAGGTTTTAAATACACCT
CTTAGTATTGTTGATGGAACAAAGCAAGCCCCTACTGATAGGGTTGGAGAAGTGGAATTTAGAAATGTTAGCTTCAAATA
TCCAGATGCTGAAGAATATGTGATTGAAAACATCAGTTTCAAAGCGAACCGAGGCGAAACCGTTGCTTTTATTGGATCAA
CGGGTAGTGGTAAGTCAACCTTAATCAACTTAGTTCCTCGTTTTTACGATGCAACCGAAGGAGAAGTCTTAGTTGATGGA
ATGAACGTCAAGGATTATAAACAATCTGATTTAAACAATAAGCTGGGCTATGTTTCACAAAAAGCCGTCTTATTTGCTGG
TACAGTAGAGTCCAATATTGTTTTTGGAGATAACGGACGTCAGATGGCTAAATTAGATCAGGTTAAAAAAGCAATCACCA
TTGCCCAAGGTCGTGACTTTGTTGAAAAAATGGATCGAACTTATCACTCATCTATTGCTCAAGGAGGAAGTAACGTTTCC
GGAGGACAAAAACAACGTCTTGCAATCGCTCGTGCCATTTGTCGTGATCCTGAGATCTATATTTTTGATGATTCTTTCTC
AGCGCTCGATTATAAAACAGATCGTGTCTTACGCGCTGCATTACGACAAGAAACAAAGGATGCAACCCATTTAATTGTTG
CGCAACGAATTGGAACGATCATTCATGCGGATAAAATTATTGTACTCGATGAAGGAAAAATGGTTGGCATCGGAACCCAT
CAAGAGCTTTTGAAAAATTGTGAAGTTTACCGACAAATTGCTTATTCACAATTATCGAAGGAGGAGTTAGAACATGAGTA
G

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-505)

ABC transporter transmembrane region (ABC_membrane)

(16-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

55.075

100

0.565