Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   HLK68_RS11300 Genome accession   NZ_CP053187
Coordinates   2326868..2328625 (+) Length   585 a.a.
NCBI ID   WP_132942787.1    Uniprot ID   -
Organism   Turicibacter sanguinis strain MOL361     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2321868..2333625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLK68_RS11280 (HLK68_11300) - 2322060..2323025 (-) 966 WP_009607717.1 asparaginase -
  HLK68_RS11285 (HLK68_11305) - 2323257..2323931 (+) 675 WP_006785760.1 response regulator transcription factor -
  HLK68_RS11290 (HLK68_11310) - 2323928..2324971 (+) 1044 WP_132942785.1 cell wall metabolism sensor histidine kinase WalK -
  HLK68_RS11295 (HLK68_11315) rcrP 2325111..2326868 (+) 1758 WP_132942786.1 ABC transporter ATP-binding protein Regulator
  HLK68_RS11300 (HLK68_11320) rcrQ 2326868..2328625 (+) 1758 WP_132942787.1 ABC transporter ATP-binding protein Regulator
  HLK68_RS11305 (HLK68_11325) - 2328848..2329507 (-) 660 WP_006785764.1 YafY family protein -
  HLK68_RS11310 (HLK68_11330) - 2329534..2330721 (-) 1188 WP_006785765.1 M20 family metallopeptidase -
  HLK68_RS11315 (HLK68_11335) - 2330880..2331977 (-) 1098 WP_006785766.1 SLC13 family permease -
  HLK68_RS11320 (HLK68_11340) - 2332305..2332607 (+) 303 WP_006785767.1 hypothetical protein -
  HLK68_RS11325 (HLK68_11345) - 2332698..2333270 (+) 573 WP_132942788.1 hypothetical protein -
  HLK68_RS11330 (HLK68_11350) - 2333394..2333594 (+) 201 WP_132942789.1 hypothetical protein -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 64832.45 Da        Isoelectric Point: 6.7376

>NTDB_id=443371 HLK68_RS11300 WP_132942787.1 2326868..2328625(+) (rcrQ) [Turicibacter sanguinis strain MOL361]
MRKKDKNESSLIKLVHYCRRYLPMMIIALIGAGIGTSLTLFGPDKLSEMTDLMTEGLFGEIDIEAISSIGMTLIIIYGIS
FVLSLSQGLIMANITQKVSKNLRTDLSKKINKLPMSYYNKTTTGDILSRVTNDVDTIGQTLNQSVGTLVTAICLFLGSLI
MMLKTNVLLTITAILATVIGFVLVGFIMKKSQKYFLKQQEGLGKINGHIEEVYTGHTIVKAYNAEKQMGDIFESMNQELK
QNGFKAQLLAGLMMPLMTFIGNLGYVAVCIVGAVLAMNDVISFGVIVAFIMYVRYFTQPLAQMAQAAQSLQSATAASHRV
FEFLEAKEMEDESHKIKRLETAQGNVEFKNVTFTYEGTTHPVIKNFSTKVKPGQKIAIVGPTGAGKTTLVNLLMRFNEIN
GGAIYIDGTPINQLTRENIHDLFCMVLQDTWLFEGSVKENLVYNQAHITDEQIEEACKAVGLHHFIQTLHHGYDTILDDK
LNLSAGQKQQLTIARAMLKNSPMLILDEATSSVDTRTELIIQQAMDQLMEGRTSFVIAHRLSTIKNADVILVLKDGDILE
SGNHESLLAKQGFYAELYNSQFEQA

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=443371 HLK68_RS11300 WP_132942787.1 2326868..2328625(+) (rcrQ) [Turicibacter sanguinis strain MOL361]
ATGAGAAAAAAAGATAAAAATGAAAGTAGCCTGATTAAATTAGTTCATTATTGTCGTCGCTATCTTCCTATGATGATTAT
TGCACTAATTGGTGCAGGGATTGGAACATCCCTAACCTTATTTGGGCCAGATAAGCTATCAGAAATGACAGATTTGATGA
CTGAGGGATTATTTGGTGAGATTGATATCGAAGCCATTAGTTCAATTGGGATGACATTAATCATCATTTATGGAATTAGT
TTTGTGTTATCACTTTCTCAAGGCTTGATTATGGCAAATATAACGCAAAAGGTTTCGAAAAATTTAAGAACAGATTTATC
TAAAAAGATAAACAAACTACCCATGTCTTATTATAATAAGACAACAACAGGTGATATTCTTTCTCGAGTAACGAATGATG
TGGACACAATTGGACAAACGTTAAATCAAAGTGTTGGAACTTTAGTGACGGCAATTTGTTTGTTCTTGGGATCTTTGATC
ATGATGCTTAAAACAAATGTGTTATTAACCATTACCGCTATTTTAGCTACTGTAATTGGTTTTGTTTTAGTAGGATTTAT
CATGAAAAAATCACAAAAATACTTCTTAAAACAACAAGAAGGCTTAGGAAAAATAAATGGTCATATTGAAGAAGTTTACA
CAGGGCATACGATTGTGAAAGCCTATAATGCTGAAAAGCAAATGGGAGATATCTTTGAATCGATGAATCAAGAATTAAAG
CAAAATGGATTTAAGGCGCAGTTATTGGCAGGTCTTATGATGCCATTAATGACCTTTATTGGAAACCTTGGATATGTTGC
AGTTTGTATCGTTGGAGCTGTCCTTGCAATGAATGATGTCATTTCATTTGGAGTGATTGTGGCCTTTATTATGTATGTTC
GCTACTTTACACAACCCCTAGCACAAATGGCACAAGCAGCGCAAAGCTTACAATCAGCAACAGCGGCAAGTCATCGTGTC
TTTGAATTTTTAGAAGCGAAGGAAATGGAGGATGAGAGCCATAAAATAAAACGACTTGAAACAGCTCAAGGAAATGTAGA
GTTTAAAAATGTGACATTCACCTATGAAGGGACAACTCATCCGGTTATTAAAAATTTCTCGACAAAAGTAAAACCAGGTC
AAAAAATTGCGATTGTTGGTCCAACAGGTGCTGGAAAAACAACACTTGTTAACTTACTCATGCGATTTAATGAAATAAAT
GGTGGAGCGATTTATATTGATGGTACGCCAATTAATCAATTAACCAGAGAGAACATTCATGATTTATTCTGTATGGTTTT
ACAAGACACTTGGTTATTTGAAGGATCAGTGAAAGAAAATTTAGTTTATAATCAAGCGCATATTACGGATGAACAAATTG
AAGAGGCTTGTAAAGCGGTGGGATTACACCATTTTATTCAAACGTTACATCATGGTTATGATACGATTTTAGATGATAAA
TTGAATCTATCAGCTGGACAAAAACAACAATTAACGATTGCACGAGCGATGCTGAAAAATTCACCGATGTTGATATTAGA
TGAAGCCACAAGTTCCGTTGATACGAGAACAGAGCTTATTATTCAACAAGCAATGGATCAATTAATGGAAGGTAGAACCT
CTTTCGTGATTGCACATCGATTATCAACGATTAAAAATGCAGATGTGATTCTAGTTTTAAAAGATGGCGACATTTTAGAA
AGTGGAAATCATGAATCGTTATTAGCTAAACAAGGATTCTACGCAGAATTATATAACAGTCAATTTGAACAAGCATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(364-511)

ABC transporter transmembrane region (ABC_membrane)

(25-300)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

56.627

99.316

0.562