Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   HLK68_RS11295 Genome accession   NZ_CP053187
Coordinates   2325111..2326868 (+) Length   585 a.a.
NCBI ID   WP_132942786.1    Uniprot ID   -
Organism   Turicibacter sanguinis strain MOL361     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2320111..2331868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLK68_RS11265 (HLK68_11285) - 2320120..2321178 (+) 1059 WP_229040101.1 low specificity L-threonine aldolase -
  HLK68_RS11270 (HLK68_11290) - 2321351..2321533 (+) 183 WP_006785756.1 hypothetical protein -
  HLK68_RS14755 - 2321668..2321793 (+) 126 WP_006785757.1 hypothetical protein -
  HLK68_RS11275 (HLK68_11295) - 2321797..2322012 (+) 216 WP_006785758.1 hypothetical protein -
  HLK68_RS11280 (HLK68_11300) - 2322060..2323025 (-) 966 WP_009607717.1 asparaginase -
  HLK68_RS11285 (HLK68_11305) - 2323257..2323931 (+) 675 WP_006785760.1 response regulator transcription factor -
  HLK68_RS11290 (HLK68_11310) - 2323928..2324971 (+) 1044 WP_132942785.1 cell wall metabolism sensor histidine kinase WalK -
  HLK68_RS11295 (HLK68_11315) rcrP 2325111..2326868 (+) 1758 WP_132942786.1 ABC transporter ATP-binding protein Regulator
  HLK68_RS11300 (HLK68_11320) rcrQ 2326868..2328625 (+) 1758 WP_132942787.1 ABC transporter ATP-binding protein Regulator
  HLK68_RS11305 (HLK68_11325) - 2328848..2329507 (-) 660 WP_006785764.1 YafY family protein -
  HLK68_RS11310 (HLK68_11330) - 2329534..2330721 (-) 1188 WP_006785765.1 M20 family metallopeptidase -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 65212.81 Da        Isoelectric Point: 6.7331

>NTDB_id=443370 HLK68_RS11295 WP_132942786.1 2325111..2326868(+) (rcrP) [Turicibacter sanguinis strain MOL361]
MIKIFKHLKVKEWILFAISFIFIVAQVWLDLKLPDYMSEITRLVQTPGSEMNEIWVAGGYMLLCALASLGTSFIAAAISA
KIAANFSARLRSGLFDKVQSFSMEEINNFSTASLITRSTNDINQVQMFIVMGLQMLIKAPIMAFWALMKIYDKSWQWTLS
TGVAVMVLFIIVGICMIIALPKFRRIQQLTDNLNRSARENISGLRVIRAYNAEKYQEDKFTVANNDLTYNNLYTNSVMAS
LMPSISMIMSGLSLAIYWVGAILINDATLPSRMEIFSDMIVFSSYAVQVVMGFMMLIMVFILLPRATVSAKRINEVLETK
SVIKNGSLTQSPTGMSGEIEFKRVSFKYADSDDYVLEDISFTAKRGETIAFIGATGCGKSTLVNLIPRFYDVSEGEILIN
GINVKEYDQKALRNKFGYVSQKATLFEGTVQSNVAFGENGKGTQGLETVMDAVQIAQASEFVEKMDNSYEAHVAQGGTNL
SGGQKQRLSIARAIARRPEVLIFDDSFSALDYKTDRQLRSILKKETIGTTLLIVAQRIGTIKDADKIIVLEEGRIVGMGS
HNELMENCEAYQEIAYSQLSKEELA

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=443370 HLK68_RS11295 WP_132942786.1 2325111..2326868(+) (rcrP) [Turicibacter sanguinis strain MOL361]
ATGATAAAGATTTTTAAACATTTAAAAGTAAAAGAATGGATTCTTTTTGCTATTAGCTTCATCTTTATTGTGGCTCAAGT
CTGGTTAGATTTAAAATTACCGGACTATATGAGTGAGATTACGCGATTAGTTCAAACACCAGGAAGTGAGATGAATGAGA
TTTGGGTGGCTGGGGGATACATGCTCTTGTGCGCGTTAGCTAGCTTAGGAACCTCATTTATTGCAGCGGCTATTTCAGCT
AAAATTGCGGCGAACTTTTCAGCACGATTGCGTTCAGGATTATTTGATAAAGTCCAATCCTTCTCAATGGAGGAAATTAA
TAATTTTTCAACTGCGAGTTTAATTACACGCTCAACGAATGATATTAATCAAGTGCAAATGTTTATTGTCATGGGGTTAC
AAATGTTAATTAAAGCTCCTATTATGGCATTTTGGGCGTTAATGAAAATCTATGATAAAAGTTGGCAGTGGACGTTGTCA
ACAGGAGTTGCTGTCATGGTTTTATTCATCATTGTTGGAATCTGTATGATCATTGCATTACCTAAATTTAGAAGAATTCA
ACAATTAACGGATAATTTAAATCGAAGTGCTCGAGAAAATATTAGTGGTTTACGTGTGATTCGTGCCTATAATGCAGAGA
AATATCAAGAAGATAAATTTACGGTAGCGAATAATGACTTAACGTATAACAATTTATATACAAACTCTGTTATGGCAAGT
TTAATGCCAAGTATTAGCATGATTATGAGCGGTTTAAGTCTTGCTATTTATTGGGTTGGGGCTATCTTGATTAATGATGC
GACATTACCATCAAGAATGGAAATTTTTTCGGATATGATTGTTTTCTCATCTTATGCGGTACAAGTAGTCATGGGATTTA
TGATGTTAATTATGGTATTTATTTTACTTCCACGTGCTACTGTTTCGGCTAAACGAATTAACGAGGTATTGGAAACAAAA
TCAGTGATTAAAAATGGTTCGTTGACTCAATCGCCAACAGGAATGAGTGGTGAAATAGAATTTAAACGAGTGAGCTTTAA
ATATGCTGATAGTGATGATTATGTATTAGAAGATATATCATTTACAGCAAAACGTGGAGAAACCATTGCCTTTATCGGAG
CGACAGGTTGTGGAAAAAGTACATTGGTTAATTTAATTCCACGCTTTTACGATGTCAGTGAAGGTGAAATTTTAATCAAT
GGGATTAATGTAAAAGAATATGACCAAAAAGCACTTCGTAATAAATTTGGTTATGTGTCTCAAAAAGCGACTTTATTTGA
AGGGACTGTTCAATCGAATGTTGCATTTGGAGAGAATGGAAAAGGAACACAAGGATTAGAGACAGTAATGGATGCAGTTC
AAATTGCACAGGCTTCTGAATTTGTTGAGAAAATGGACAACAGTTATGAAGCTCATGTGGCTCAGGGTGGAACCAATTTA
TCTGGTGGACAAAAACAACGTTTATCTATCGCGAGGGCGATTGCTCGACGTCCTGAAGTTTTAATTTTTGACGATTCATT
TTCAGCGCTTGATTACAAGACTGATCGACAATTAAGAAGTATTCTAAAAAAAGAGACCATTGGAACAACGTTATTAATTG
TTGCTCAGCGTATCGGAACCATTAAAGATGCTGATAAAATTATTGTTTTAGAAGAGGGGCGAATCGTCGGAATGGGCTCA
CATAATGAGTTGATGGAAAATTGTGAAGCTTATCAAGAAATTGCTTATTCTCAACTTTCAAAGGAGGAGCTTGCGTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-291)

ABC transporter (ABC_tran)

(356-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.013

100

0.53