Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   IUJ36_RS00665 Genome accession   NZ_CP064383
Coordinates   142295..142900 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli O157:H7 strain PartA-EcoliO157H7-RM8376     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 137295..147900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ36_RS00635 (IUJ36_00635) rsmS 137997..138161 (-) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -
  IUJ36_RS00640 (IUJ36_00640) priC 138175..138702 (-) 528 WP_000844886.1 primosomal replication protein N'' -
  IUJ36_RS00645 (IUJ36_00645) ybaN 138772..139149 (+) 378 WP_001188905.1 DUF454 family protein -
  IUJ36_RS00650 (IUJ36_00650) apt 139302..139853 (+) 552 WP_001301904.1 adenine phosphoribosyltransferase -
  IUJ36_RS00655 (IUJ36_00655) dnaX 139982..141913 (+) 1932 WP_000122006.1 DNA polymerase III subunit gamma/tau -
  IUJ36_RS00660 (IUJ36_00660) ybaB 141966..142295 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  IUJ36_RS00665 (IUJ36_00665) recR 142295..142900 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  IUJ36_RS00670 (IUJ36_00670) htpG 143010..144884 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  IUJ36_RS00675 (IUJ36_00675) adk 145065..145709 (+) 645 WP_001220233.1 adenylate kinase -
  IUJ36_RS00680 (IUJ36_00680) hemH 145841..146803 (+) 963 WP_001250105.1 ferrochelatase -
  IUJ36_RS00685 (IUJ36_00685) aes 146800..147759 (-) 960 WP_000801803.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=443370 IUJ36_RS00665 WP_001195025.1 142295..142900(+) (recR) [Escherichia coli O157:H7 strain PartA-EcoliO157H7-RM8376]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=443370 IUJ36_RS00665 WP_001195025.1 142295..142900(+) (recR) [Escherichia coli O157:H7 strain PartA-EcoliO157H7-RM8376]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCTACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443