Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilA1   Type   Machinery gene
Locus tag   SYNGTI_RS06050 Genome accession   NC_017038
Coordinates   1295912..1296418 (-) Length   168 a.a.
NCBI ID   WP_010872381.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 6803 substr. GT-I     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1290912..1301418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SYNGTI_RS06025 (SYNGTI_1170) - 1291134..1291598 (+) 465 WP_010872376.1 DUF29 domain-containing protein -
  SYNGTI_RS06030 (SYNGTI_1171) - 1291739..1292275 (+) 537 WP_010872377.1 methyltransferase domain-containing protein -
  SYNGTI_RS06035 (SYNGTI_1172) - 1292317..1294470 (+) 2154 WP_010872378.1 hypothetical protein -
  SYNGTI_RS06040 (SYNGTI_1173) - 1294487..1295299 (-) 813 WP_010872379.1 hypothetical protein -
  SYNGTI_RS06045 (SYNGTI_1174) - 1295301..1295813 (-) 513 WP_010872380.1 type IV pilin protein -
  SYNGTI_RS06050 (SYNGTI_1175) pilA/pilA1 1295912..1296418 (-) 507 WP_010872381.1 type IV pilin protein Machinery gene
  SYNGTI_RS06055 (SYNGTI_1176) - 1296562..1297884 (-) 1323 WP_010872382.1 bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG -
  SYNGTI_RS06060 (SYNGTI_1177) - 1298039..1298644 (+) 606 WP_010872383.1 hypothetical protein -
  SYNGTI_RS06065 (SYNGTI_1178) - 1298648..1299085 (-) 438 WP_010872384.1 DUF29 domain-containing protein -
  SYNGTI_RS06070 (SYNGTI_1179) - 1299078..1299530 (-) 453 WP_010872385.1 DUF4351 domain-containing protein -
  SYNGTI_RS06075 (SYNGTI_1180) - 1299580..1300575 (+) 996 WP_010872386.1 pentapeptide repeat-containing protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 17573.69 Da        Isoelectric Point: 4.4065

>NTDB_id=44333 SYNGTI_RS06050 WP_010872381.1 1295912..1296418(-) (pilA/pilA1) [Synechocystis sp. PCC 6803 substr. GT-I]
MASNFKFKLLSQLSKKRAEGGFTLIELLVVVIIIGVLAAIALPNLLGQVGKARESEAKSTIGALNRAQQGYFTEKGTFAT
DTETLEVPAPDGNFFSFAVNTADNTEAIQDATALNWEADGTRSMSGGTFYDSGTRAFSTVVCRAEAGSEDTPPTPGGAND
CGGAEVIK

Nucleotide


Download         Length: 507 bp        

>NTDB_id=44333 SYNGTI_RS06050 WP_010872381.1 1295912..1296418(-) (pilA/pilA1) [Synechocystis sp. PCC 6803 substr. GT-I]
ATGGCTAGTAATTTTAAATTCAAACTCCTCTCTCAACTCTCCAAAAAACGGGCAGAAGGTGGTTTCACCTTAATCGAACT
GCTGGTTGTTGTAATTATTATCGGTGTATTGGCTGCTATTGCTCTGCCTAACCTCTTGGGTCAAGTTGGTAAAGCACGGG
AGTCCGAAGCTAAATCCACTATCGGTGCTTTGAACCGTGCCCAACAAGGTTATTTTACTGAGAAGGGTACGTTTGCAACC
GATACGGAAACGCTTGAAGTCCCAGCTCCTGATGGTAATTTCTTTAGTTTTGCAGTTAACACTGCTGACAACACAGAAGC
TATCCAAGACGCAACGGCATTGAATTGGGAGGCTGACGGCACCCGCTCCATGTCAGGTGGAACGTTTTACGATTCAGGCA
CCCGCGCCTTCAGTACTGTTGTTTGTCGGGCTGAAGCAGGTAGTGAAGATACTCCCCCAACCCCAGGAGGGGCTAATGAT
TGTGGTGGTGCTGAAGTAATTAAATAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(17-42)

Type IV pilin-like G and H, putative (Pilin_GH)

(54-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilA1 Synechocystis sp. PCC 6803

100

100

1

Multiple sequence alignment