Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   IUJ44_RS14470 Genome accession   NZ_CP064375
Coordinates   3042950..3043585 (+) Length   211 a.a.
NCBI ID   WP_000264037.1    Uniprot ID   A0ABX6CFI5
Organism   Acinetobacter baumannii strain PartI-Abaumannii-RM8376 isolate ATCC isolate     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3037950..3048585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ44_RS14445 (IUJ44_14415) - 3038790..3039803 (+) 1014 WP_001096107.1 phosphotransferase -
  IUJ44_RS14450 (IUJ44_14420) murU 3039803..3040492 (+) 690 WP_000646456.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  IUJ44_RS14455 (IUJ44_14425) rsmG 3040580..3041212 (+) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  IUJ44_RS14460 (IUJ44_14430) - 3041234..3042016 (+) 783 WP_000057216.1 ParA family protein -
  IUJ44_RS14465 (IUJ44_14435) - 3042013..3042900 (+) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  IUJ44_RS14470 (IUJ44_14440) exbB 3042950..3043585 (+) 636 WP_000264037.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  IUJ44_RS14475 (IUJ44_14445) - 3043601..3044029 (+) 429 WP_000669683.1 biopolymer transporter ExbD -
  IUJ44_RS14480 (IUJ44_14450) msbA 3044026..3045753 (+) 1728 WP_001070730.1 lipid A export permease/ATP-binding protein MsbA -
  IUJ44_RS14485 (IUJ44_14455) lpxK 3045756..3046766 (+) 1011 WP_000050456.1 tetraacyldisaccharide 4'-kinase -
  IUJ44_RS14490 (IUJ44_14460) kdsB 3046776..3047537 (+) 762 WP_000680698.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  IUJ44_RS14495 (IUJ44_14465) - 3047549..3048529 (+) 981 WP_001075416.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23198.10 Da        Isoelectric Point: 6.4861

>NTDB_id=443282 IUJ44_RS14470 WP_000264037.1 3042950..3043585(+) (exbB) [Acinetobacter baumannii strain PartI-Abaumannii-RM8376 isolate ATCC isolate]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=443282 IUJ44_RS14470 WP_000264037.1 3042950..3043585(+) (exbB) [Acinetobacter baumannii strain PartI-Abaumannii-RM8376 isolate ATCC isolate]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCGCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393