Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   HLJ13_RS04085 Genome accession   NZ_CP053181
Coordinates   810444..812117 (+) Length   557 a.a.
NCBI ID   WP_002397924.1    Uniprot ID   A0A449FZN5
Organism   Enterococcus faecalis strain FMAMOB6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 805444..817117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLJ13_RS04055 (HLJ13_04030) - 805695..806540 (+) 846 WP_002355876.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  HLJ13_RS04060 (HLJ13_04035) xseA 806550..807896 (+) 1347 WP_002355877.1 exodeoxyribonuclease VII large subunit -
  HLJ13_RS04065 (HLJ13_04040) - 807898..808128 (+) 231 WP_002364628.1 exodeoxyribonuclease VII small subunit -
  HLJ13_RS04070 (HLJ13_04045) - 808128..809009 (+) 882 WP_002371528.1 polyprenyl synthetase family protein -
  HLJ13_RS04075 (HLJ13_04050) - 809023..809838 (+) 816 WP_002364633.1 TlyA family rRNA (cytidine-2'-O)-methyltransferase -
  HLJ13_RS04080 (HLJ13_04055) - 809977..810426 (+) 450 WP_002358881.1 ArgR family transcriptional regulator -
  HLJ13_RS04085 (HLJ13_04060) recN 810444..812117 (+) 1674 WP_002397924.1 DNA repair protein RecN Machinery gene
  HLJ13_RS04090 (HLJ13_04065) - 812208..812318 (-) 111 WP_002383399.1 DUF4044 domain-containing protein -
  HLJ13_RS04095 (HLJ13_04070) - 812386..813351 (-) 966 WP_002383400.1 magnesium transporter CorA family protein -
  HLJ13_RS04100 (HLJ13_04075) - 813596..813988 (+) 393 WP_002383401.1 DUF3397 domain-containing protein -
  HLJ13_RS04105 (HLJ13_04080) mraZ 814222..814707 (+) 486 WP_002383402.1 division/cell wall cluster transcriptional repressor MraZ -
  HLJ13_RS04110 (HLJ13_04085) rsmH 814722..815678 (+) 957 WP_002355891.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  HLJ13_RS04115 (HLJ13_04090) ftsL 815695..816102 (+) 408 WP_002385090.1 cell division protein FtsL -

Sequence

Protein


Download         Length: 557 a.a.        Molecular weight: 62631.00 Da        Isoelectric Point: 4.5521

>NTDB_id=443242 HLJ13_RS04085 WP_002397924.1 810444..812117(+) (recN) [Enterococcus faecalis strain FMAMOB6]
MLQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRGSSDYIRQGANKCTLEGLFSMPKSQELKQLL
EELGIETEEDSLVIQRDISASGKNVCRVNGRIVNITNLKRIGEYLVDIHGQNEHQELMQSERHIDMLDEFGGKKLLAVKE
KYTQAYQEYRALEAKVRKRQKNEKEFAQRMDMLHFQSDEIASAQLVAGEEEQLLEERNKLNNFQKIADALTISYAALNGE
DDSSLDKIGTSMNELASIESLDSEYKTLSDTVQNAYYLLQEASGDLSRLIDGLELDEGRLNEVENRLELIRQMKRKYGDS
IETILSYYEEITKELAEADFLEGGTGDLEALLAEKQQAAHQQALALRKERKRLAKELEQQILTELKELYLERTEFEVRFT
ELEHLQENGLDGVEFYITTNPGEPLKPLVRVASGGELSRVMLAMKTIFSQTQGITSIVFDEVDTGVSGRVAQAIADKIYQ
ISENSQVLCITHLPQVAAVADEHYFIEKEIVAGRTETSVRILSEKERVNEIARMLAGSEITKLTIEHAQELLAMAKK

Nucleotide


Download         Length: 1674 bp        

>NTDB_id=443242 HLJ13_RS04085 WP_002397924.1 810444..812117(+) (recN) [Enterococcus faecalis strain FMAMOB6]
ATGTTACAAGAACTTTCCGTGAAAAATTTTGCGATTATCTCTTCGTTACAATTAGAGTTTCAAATGGGTATGACCGTTTT
AACGGGAGAAACGGGTGCGGGGAAATCCATCATTATTGATGCAATGGGATTACTCACAGGCGGACGTGGCTCCAGTGACT
ATATTCGTCAAGGAGCAAATAAATGCACCTTAGAAGGACTTTTTTCAATGCCGAAAAGTCAAGAATTAAAGCAATTATTA
GAAGAATTAGGTATTGAAACAGAAGAAGATTCTTTAGTGATTCAACGAGATATTTCCGCTTCTGGTAAAAATGTTTGCCG
TGTCAACGGACGAATTGTCAACATTACTAATTTAAAAAGAATTGGGGAATATTTAGTAGATATTCATGGCCAAAACGAAC
ATCAAGAATTGATGCAAAGTGAACGCCATATTGATATGTTAGATGAATTTGGTGGGAAAAAACTTTTAGCAGTCAAAGAA
AAATATACACAGGCGTATCAAGAGTATCGCGCACTCGAAGCCAAAGTCAGAAAGCGACAAAAAAATGAAAAAGAATTTGC
CCAAAGAATGGACATGCTTCATTTTCAAAGTGATGAAATTGCTAGTGCACAGTTAGTCGCTGGCGAAGAAGAACAATTGT
TAGAAGAACGCAATAAACTGAACAATTTTCAAAAGATTGCTGATGCACTGACGATTAGTTATGCCGCGCTAAATGGTGAA
GACGATAGTAGTTTGGATAAAATCGGAACAAGTATGAATGAACTCGCTTCGATTGAATCCCTTGATTCAGAATATAAAAC
ATTGTCAGATACTGTTCAAAATGCTTACTACTTACTACAAGAAGCCAGTGGAGATCTTTCTAGGTTGATTGATGGCTTAG
AACTAGACGAAGGCCGCTTGAATGAAGTAGAAAATCGTTTGGAATTAATCCGTCAAATGAAACGTAAATATGGCGATTCA
ATCGAAACGATTTTATCTTACTATGAAGAAATCACCAAAGAGTTAGCAGAGGCTGATTTTTTGGAAGGTGGTACAGGTGA
CTTAGAAGCGTTGCTTGCAGAGAAACAACAAGCCGCTCATCAACAAGCATTAGCTTTACGAAAAGAACGAAAGCGCCTAG
CCAAAGAGCTCGAACAACAAATTTTAACCGAATTAAAAGAACTATATTTGGAGCGAACGGAATTTGAAGTCCGTTTTACA
GAACTTGAGCATTTACAAGAAAATGGCTTAGACGGAGTAGAATTTTATATTACTACTAACCCAGGGGAACCATTAAAACC
GTTAGTTCGGGTGGCTTCTGGCGGAGAACTTTCGCGAGTGATGCTAGCTATGAAAACAATCTTTTCTCAAACGCAAGGGA
TCACTAGTATTGTTTTTGATGAAGTGGATACAGGAGTTAGTGGCCGAGTAGCACAGGCGATTGCCGATAAAATTTATCAA
ATTTCAGAAAATTCGCAGGTGTTGTGTATCACGCACTTGCCACAAGTGGCGGCCGTTGCCGATGAACATTATTTTATTGA
AAAAGAAATCGTGGCGGGTCGGACAGAAACAAGCGTCCGAATTTTATCTGAAAAAGAGCGAGTAAACGAAATTGCGCGTA
TGCTCGCAGGAAGTGAAATTACGAAATTAACCATTGAACATGCACAAGAGCTGTTGGCGATGGCGAAAAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A449FZN5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.691

100

0.501