Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   HLJ12_RS09800 Genome accession   NZ_CP053180
Coordinates   2069245..2071062 (-) Length   605 a.a.
NCBI ID   WP_225001030.1    Uniprot ID   -
Organism   Enterococcus casseliflavus strain SP11     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2064245..2076062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLJ12_RS09775 (HLJ12_09755) - 2065202..2066101 (-) 900 WP_225001028.1 RluA family pseudouridine synthase -
  HLJ12_RS09780 (HLJ12_09760) - 2066106..2066903 (-) 798 WP_026008090.1 NAD kinase -
  HLJ12_RS09785 (HLJ12_09765) - 2066909..2067577 (-) 669 WP_225001029.1 GTP pyrophosphokinase family protein -
  HLJ12_RS09790 (HLJ12_09770) - 2067774..2068349 (+) 576 WP_156235818.1 CYTH domain-containing protein -
  HLJ12_RS09795 (HLJ12_09775) - 2068458..2069114 (+) 657 WP_074932949.1 ClpXP adapter SpxH family protein -
  HLJ12_RS09800 (HLJ12_09780) pepF 2069245..2071062 (-) 1818 WP_225001030.1 oligoendopeptidase F Regulator
  HLJ12_RS09805 (HLJ12_09785) - 2071131..2072120 (-) 990 WP_225001031.1 competence protein CoiA family protein -
  HLJ12_RS09810 (HLJ12_09790) - 2072221..2072871 (-) 651 WP_005229698.1 adaptor protein MecA -
  HLJ12_RS09815 (HLJ12_09795) spxA 2073024..2073422 (-) 399 WP_003127030.1 transcriptional regulator SpxA -
  HLJ12_RS09820 (HLJ12_09800) - 2074133..2075869 (-) 1737 WP_225001032.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69125.69 Da        Isoelectric Point: 4.6724

>NTDB_id=443213 HLJ12_RS09800 WP_225001030.1 2069245..2071062(-) (pepF) [Enterococcus casseliflavus strain SP11]
MSETKQLPARESIPVEKTWDLTKIYADDAAFDIEFQEIQAQVKEASRYQGTLADGPQAFLSALEFVLDLSRRLEKLYVYS
HLKNDQDTANTTYQGLYAKASSLVAQVSEAVAWFDPELLTMSDETIWGYFDQEPKLAVYRHMIEKTINERPHILPAEQEA
LLAGAGEIFGAPGNIFSVLNNADLDFPVVEDENGEKVQLSHGVYGELMESTDRSVREAAFKGLYGVYEQFRNTFAQTLST
NIKAHNFKAKARKFDSARQAALSANHIPESVYDTLVDVVNQHLPLLHRYMALRKRLLAVDTLHMYDVYTPILGEAPIRYT
YEEAVEKAKEALKPLGEEYLAVVEEAFSNRWIDVVENKGKRSGAYSSGAYDTLPYILMNWNDRLDQLFTLVHEMGHSVHS
YFTRNNQPYAYGDYSIFLAEIASTTNENILTEYMLQTETDPRVKAYVLNHFLDGFKGTIFRQTQFAEFEHFMHVEDAKGT
PLTSEFLSENYAELNAKYYGPSVEKDPEIRLEWSRIPHFYYNYYVYQYSTGFSAASALAKKILAGEPDALTNYLNYLKAG
RSDYPIEVMKKAGVDMTKADYIEDAMKVFEQRLNELEELVKEIEA

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=443213 HLJ12_RS09800 WP_225001030.1 2069245..2071062(-) (pepF) [Enterococcus casseliflavus strain SP11]
ATGTCAGAAACAAAACAATTACCAGCACGTGAATCGATTCCAGTCGAAAAAACGTGGGACTTAACGAAAATCTATGCCGA
TGATGCGGCTTTTGACATAGAATTTCAAGAAATCCAAGCACAGGTCAAAGAAGCCAGCCGTTACCAAGGAACTTTAGCAG
ACGGTCCGCAAGCCTTCTTATCCGCTTTAGAATTTGTCTTAGATCTTTCTCGCCGTTTGGAGAAGCTGTATGTTTACAGT
CATTTGAAAAACGATCAAGATACCGCTAATACGACTTATCAAGGCTTATATGCGAAAGCCAGCAGTTTAGTTGCGCAAGT
AAGTGAAGCCGTTGCTTGGTTTGATCCCGAGTTATTGACGATGTCCGATGAAACGATTTGGGGCTATTTCGATCAAGAAC
CGAAACTAGCTGTTTATCGTCATATGATCGAAAAAACCATCAACGAGCGTCCACATATCTTGCCAGCGGAGCAAGAAGCG
TTATTAGCCGGTGCTGGCGAAATTTTTGGGGCACCCGGCAACATTTTTTCTGTTTTAAACAATGCTGATTTGGATTTTCC
AGTAGTTGAAGACGAAAACGGGGAAAAAGTACAGTTATCTCATGGTGTATACGGTGAGTTGATGGAAAGCACGGATCGAT
CTGTCCGTGAAGCAGCCTTTAAAGGTCTTTATGGTGTCTATGAGCAATTCCGCAATACCTTTGCCCAAACCTTAAGCACC
AATATCAAAGCTCATAACTTTAAAGCAAAAGCCCGCAAATTTGATTCGGCACGGCAAGCCGCTTTGAGTGCCAACCATAT
TCCTGAAAGTGTCTATGATACCTTAGTGGACGTCGTCAATCAGCACCTGCCATTGTTGCATCGTTATATGGCATTAAGAA
AACGCCTGTTGGCTGTCGATACGTTGCATATGTATGATGTTTATACGCCAATTTTAGGGGAAGCGCCTATTCGTTATACT
TATGAAGAAGCGGTCGAAAAAGCGAAAGAAGCGTTAAAACCATTAGGTGAAGAATACCTTGCAGTGGTTGAAGAAGCCTT
CAGCAATCGGTGGATCGATGTCGTTGAAAACAAAGGCAAACGCAGTGGCGCGTATTCTTCTGGTGCCTATGACACGCTGC
CATATATCCTGATGAACTGGAATGATCGATTGGATCAACTCTTTACTCTTGTTCATGAAATGGGACACAGTGTGCATAGT
TACTTTACACGTAATAACCAGCCTTATGCCTATGGGGATTATTCGATTTTCTTAGCAGAAATCGCTTCGACGACGAACGA
AAATATATTAACGGAATACATGCTTCAGACTGAAACAGATCCACGGGTCAAAGCCTATGTCTTGAATCATTTTCTCGATG
GCTTCAAAGGAACGATTTTCCGTCAAACGCAATTTGCTGAGTTTGAACACTTCATGCACGTGGAAGATGCGAAAGGAACG
CCGTTGACCAGTGAGTTCTTAAGCGAGAACTATGCCGAGTTAAATGCAAAATATTACGGACCTTCTGTTGAAAAAGATCC
TGAGATTCGTCTTGAGTGGTCACGCATTCCGCATTTCTATTACAATTACTATGTTTACCAGTATTCAACTGGATTTTCGG
CAGCTTCTGCTTTAGCGAAGAAAATCTTAGCAGGTGAACCAGATGCCTTAACAAACTATTTGAACTATTTGAAAGCTGGA
CGCAGTGATTATCCAATCGAAGTCATGAAAAAAGCGGGCGTCGATATGACAAAAGCAGATTATATTGAAGACGCGATGAA
AGTATTTGAGCAACGCTTGAATGAATTGGAAGAACTCGTCAAAGAAATTGAAGCATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

56.155

98.017

0.55