Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FRAAU_RS10510 Genome accession   NC_017033
Coordinates   2249546..2250925 (-) Length   459 a.a.
NCBI ID   WP_014403510.1    Uniprot ID   H8L3I2
Organism   Frateuria aurantia DSM 6220     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2244546..2255925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FRAAU_RS10480 (Fraau_2119) - 2245413..2245856 (+) 444 WP_014403505.1 SufE family protein -
  FRAAU_RS10485 (Fraau_2120) - 2246150..2246854 (+) 705 WP_041271049.1 DNA/RNA non-specific endonuclease -
  FRAAU_RS10490 (Fraau_2121) - 2246963..2247844 (-) 882 WP_014403507.1 alpha/beta hydrolase -
  FRAAU_RS10495 (Fraau_2122) - 2248013..2248558 (+) 546 WP_217176220.1 ABATE domain-containing protein -
  FRAAU_RS17700 - 2248809..2248974 (-) 166 Protein_2048 IS3 family transposase -
  FRAAU_RS10505 (Fraau_2124) - 2248987..2249508 (-) 522 WP_014403509.1 GNAT family N-acetyltransferase -
  FRAAU_RS10510 (Fraau_2125) radA 2249546..2250925 (-) 1380 WP_014403510.1 DNA repair protein RadA Machinery gene
  FRAAU_RS10515 (Fraau_2126) - 2250953..2251291 (-) 339 WP_014403511.1 helix-turn-helix transcriptional regulator -
  FRAAU_RS10520 (Fraau_2127) - 2251376..2252473 (+) 1098 WP_014403512.1 NADH:flavin oxidoreductase/NADH oxidase -
  FRAAU_RS10525 (Fraau_2128) - 2252674..2253150 (+) 477 WP_041270530.1 cupin domain-containing protein -
  FRAAU_RS10530 (Fraau_2129) - 2253187..2255877 (-) 2691 WP_169314759.1 rhamnan synthesis F family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 48279.41 Da        Isoelectric Point: 7.3703

>NTDB_id=44319 FRAAU_RS10510 WP_014403510.1 2249546..2250925(-) (radA) [Frateuria aurantia DSM 6220]
MAKAKTAYVCSECGGESSKWQGQCPECGAWNTLSEISLGPSRPNAAAGRRSGYAGGASQRARPTPLAEVATAVEQRISVG
IGELNRVLGGGLVEGSVVLIGGDPGIGKSTLLLQMLGEVGAGVAGLYVTGEESLGQVAARAQRLGLPLGPLAALAETCIE
RILEQTAEARPKVLIVDSIQTIWTETLTAAPGSVSQVRESAAQLTRFAKETGTAVFLVGHVTKEGGIAGPRVLEHMVDAV
LYFEGDPGSRFRILRAFKNRFGAVNEMGVFAMSDKGLREVANPSAIFLSTHQGPTPGSVVMVTREGTRPLLVEVQALVDQ
SSLGNPRRVTLGLEQNRLAMLLAVLHRHGGVAAYDQDVFVNVVGGIRVQETAADLPVLLAVLSSLRDRPMPEHTVAFGEV
GLSGEIRPVPNGEERLKEAMTHGFRRAIVPKANAPKSGKLGDLEVIGVERLAQAIDACR

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=44319 FRAAU_RS10510 WP_014403510.1 2249546..2250925(-) (radA) [Frateuria aurantia DSM 6220]
GTGGCCAAGGCGAAAACAGCCTACGTATGCAGTGAGTGTGGGGGTGAGTCCAGCAAGTGGCAGGGCCAGTGCCCTGAATG
CGGTGCCTGGAACACCTTGAGTGAAATCAGCCTGGGCCCGAGCCGGCCCAATGCGGCGGCCGGTCGCCGCAGCGGTTATG
CCGGTGGCGCCAGCCAGCGCGCCCGGCCCACGCCCCTGGCCGAAGTGGCCACCGCGGTAGAGCAGCGGATCAGCGTCGGC
ATCGGTGAGTTGAACCGGGTGCTGGGTGGCGGTCTGGTCGAAGGTTCGGTGGTCCTGATCGGCGGTGATCCCGGTATCGG
CAAATCCACCCTGCTGCTGCAGATGCTGGGCGAGGTGGGGGCCGGCGTGGCCGGTCTGTATGTCACTGGCGAGGAATCGT
TGGGCCAGGTGGCCGCGCGGGCCCAGCGCCTGGGCCTGCCGCTGGGGCCGCTGGCCGCCTTGGCGGAAACCTGCATCGAG
CGGATTCTGGAGCAGACGGCCGAAGCCCGGCCCAAGGTCCTGATCGTGGACTCGATCCAGACCATCTGGACCGAGACCCT
GACGGCGGCGCCCGGCTCGGTCAGCCAGGTCCGCGAGTCGGCGGCCCAGTTGACCCGCTTCGCCAAGGAGACCGGCACGG
CCGTATTCCTGGTCGGCCATGTCACCAAGGAGGGCGGCATCGCCGGGCCGCGCGTACTTGAGCACATGGTCGATGCCGTC
CTGTACTTCGAGGGCGATCCCGGTAGCCGCTTCCGGATCCTGCGCGCCTTCAAGAACCGTTTTGGCGCGGTCAACGAGAT
GGGCGTGTTCGCGATGTCGGACAAGGGCCTGCGCGAGGTCGCCAATCCCTCGGCGATCTTCCTGTCCACCCATCAGGGGC
CGACGCCGGGCAGTGTGGTGATGGTCACCCGCGAAGGCACCCGGCCGCTGCTGGTCGAGGTGCAGGCTCTGGTCGACCAG
TCATCGCTGGGCAATCCGCGTCGCGTGACCCTTGGCCTGGAGCAGAACCGGCTGGCGATGCTGCTGGCGGTGCTGCATCG
CCATGGCGGGGTGGCGGCCTATGACCAGGACGTCTTCGTCAATGTGGTCGGCGGCATCCGGGTGCAGGAAACCGCCGCCG
ATTTGCCGGTGCTGCTGGCGGTGCTGTCCAGCCTGCGCGACCGGCCCATGCCCGAGCACACGGTGGCTTTCGGGGAGGTC
GGCCTGTCCGGCGAGATCCGGCCGGTGCCCAATGGCGAGGAGCGTCTGAAGGAGGCGATGACCCATGGCTTTCGGCGCGC
CATCGTGCCCAAGGCCAATGCACCCAAATCGGGCAAGCTGGGTGATCTGGAAGTCATCGGCGTGGAGCGGCTGGCGCAGG
CGATCGACGCTTGCCGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(349-433)

AAA domain (AAA_25)

(63-225)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB H8L3I2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.342

99.346

0.49
  radA Streptococcus mitis NCTC 12261

45.495

99.129

0.451
  radA Streptococcus pneumoniae Rx1

45.495

99.129

0.451
  radA Streptococcus pneumoniae D39

45.495

99.129

0.451
  radA Streptococcus pneumoniae R6

45.495

99.129

0.451
  radA Streptococcus pneumoniae TIGR4

45.495

99.129

0.451
  radA Streptococcus mitis SK321

45.495

99.129

0.451

Multiple sequence alignment