Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   IUJ46_RS06075 Genome accession   NZ_CP064364
Coordinates   1157282..1157881 (+) Length   199 a.a.
NCBI ID   WP_010922551.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain PartK-Spyogenes-RM8376     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1152282..1162881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ46_RS06045 (IUJ46_06015) - 1152529..1153011 (+) 483 WP_002988938.1 S-ribosylhomocysteine lyase -
  IUJ46_RS06050 (IUJ46_06020) - 1153156..1154625 (-) 1470 WP_011285659.1 cell division site-positioning protein MapZ family protein -
  IUJ46_RS06055 (IUJ46_06025) - 1154639..1155793 (-) 1155 WP_010922549.1 class I SAM-dependent RNA methyltransferase -
  IUJ46_RS06065 (IUJ46_06035) gpsB 1156238..1156564 (-) 327 WP_002983626.1 cell division regulator GpsB -
  IUJ46_RS06070 (IUJ46_06040) - 1156686..1157201 (-) 516 WP_010922550.1 DUF1273 domain-containing protein -
  IUJ46_RS06075 (IUJ46_06045) recU 1157282..1157881 (+) 600 WP_010922551.1 Holliday junction resolvase RecU Machinery gene
  IUJ46_RS06080 (IUJ46_06050) pbp1a 1157868..1160033 (+) 2166 WP_009880659.1 penicillin-binding protein PBP1A -
  IUJ46_RS06085 (IUJ46_06055) pepC 1160500..1161837 (-) 1338 WP_029714071.1 aminopeptidase C -
  IUJ46_RS06090 (IUJ46_06060) nadE 1162022..1162846 (-) 825 WP_010922552.1 ammonia-dependent NAD(+) synthetase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22999.52 Da        Isoelectric Point: 9.7922

>NTDB_id=443012 IUJ46_RS06075 WP_010922551.1 1157282..1157881(+) (recU) [Streptococcus pyogenes strain PartK-Spyogenes-RM8376]
MVNYPHNLIRQKVSSVQKQNKVDFANRGMSFEAAINATNDYYLSRQIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQA
STTDYCGVYKGHYVDFEAKETRQKTAMPMKNFHLHQIEHMACVLHQKGICFVLLHFSTLKETYYLPAQALISFYQIDNGS
KSMPIDYIRKNGFKVAFGAFPQVPYLNIIEQNFLGGDYN

Nucleotide


Download         Length: 600 bp        

>NTDB_id=443012 IUJ46_RS06075 WP_010922551.1 1157282..1157881(+) (recU) [Streptococcus pyogenes strain PartK-Spyogenes-RM8376]
ATGGTTAATTATCCTCATAATCTTATTCGACAAAAAGTAAGTTCCGTTCAAAAGCAAAATAAGGTGGACTTCGCCAATAG
AGGTATGTCCTTTGAAGCTGCTATCAACGCGACAAATGATTATTATTTATCTCGTCAAATAGCTGTCATTCACAAAAAAC
CTACTCCTGTCCAAATTGTCAAAGTGGATTACCCTAAACGCAGTCGGGCAAAAATCGTTGAAGCGTACTTTAGACAAGCT
TCAACGACTGACTATTGCGGCGTTTATAAAGGACATTATGTTGATTTTGAAGCAAAAGAAACCAGGCAAAAAACAGCTAT
GCCCATGAAAAATTTCCATTTACATCAGATTGAACATATGGCTTGCGTTTTACATCAAAAAGGAATCTGCTTTGTCCTTC
TTCACTTTTCCACACTGAAGGAGACTTACTACCTACCTGCTCAAGCCTTGATTTCATTTTATCAGATAGATAATGGCAGT
AAATCGATGCCCATTGATTATATCAGAAAAAATGGCTTTAAGGTAGCATTTGGAGCCTTTCCACAAGTCCCTTATTTAAA
CATAATTGAACAAAATTTTTTAGGCGGTGATTACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(27-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

51.269

98.995

0.508