Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   HKO16_RS16275 Genome accession   NZ_CP053098
Coordinates   3424286..3424921 (+) Length   211 a.a.
NCBI ID   WP_000472273.1    Uniprot ID   A0A9P3CZD1
Organism   Acinetobacter baumannii ATCC 17978     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3419286..3429921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKO16_RS16260 (HKO16_16285) adeT2 3420346..3421332 (-) 987 WP_000712907.1 putative multidrug efflux protein AdeT2 -
  HKO16_RS16265 (HKO16_16290) - 3421412..3422227 (-) 816 WP_000547780.1 NAD-dependent epimerase/dehydratase family protein -
  HKO16_RS16270 (HKO16_16295) recG 3422248..3424293 (+) 2046 WP_000204953.1 ATP-dependent DNA helicase RecG -
  HKO16_RS16275 (HKO16_16300) comF 3424286..3424921 (+) 636 WP_000472273.1 ComF family protein Machinery gene
  HKO16_RS16280 (HKO16_16305) - 3424924..3425325 (-) 402 WP_000849701.1 NUDIX hydrolase -
  HKO16_RS16285 (HKO16_16310) - 3425340..3425921 (-) 582 WP_001084310.1 TIGR00730 family Rossman fold protein -
  HKO16_RS16290 (HKO16_16315) - 3426079..3427092 (+) 1014 WP_000888321.1 CorA family divalent cation transporter -
  HKO16_RS16295 (HKO16_16320) - 3427162..3427449 (-) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  HKO16_RS16300 (HKO16_16325) - 3427461..3428102 (-) 642 WP_009518191.1 phospholipid-binding protein MlaC -
  HKO16_RS16305 (HKO16_16330) - 3428129..3428809 (-) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  HKO16_RS16310 (HKO16_16335) mlaE 3428809..3429585 (-) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24565.69 Da        Isoelectric Point: 9.7140

>NTDB_id=442995 HKO16_RS16275 WP_000472273.1 3424286..3424921(+) (comF) [Acinetobacter baumannii ATCC 17978]
MFKFLNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=442995 HKO16_RS16275 WP_000472273.1 3424286..3424921(+) (comF) [Acinetobacter baumannii ATCC 17978]
ATGTTTAAGTTTTTAAACCCACAGTATCTTTTTCAGTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATACTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAACCGGATCATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTTGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

100

100

1
  comF Acinetobacter baumannii D1279779

99.052

100

0.991