Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   HKT17_RS13815 Genome accession   NZ_CP053084
Coordinates   2954925..2955866 (+) Length   313 a.a.
NCBI ID   WP_171100807.1    Uniprot ID   A0A520T7B6
Organism   Limnobacter sp. SAORIC-580     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2949925..2960866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKT17_RS13785 (HKT17_13790) - 2950030..2950359 (-) 330 WP_240965824.1 hypothetical protein -
  HKT17_RS13790 (HKT17_13795) - 2950546..2950773 (-) 228 Protein_2727 YfhL family 4Fe-4S dicluster ferredoxin -
  HKT17_RS13795 (HKT17_13800) coaD 2950783..2951286 (-) 504 WP_105027419.1 pantetheine-phosphate adenylyltransferase -
  HKT17_RS13800 (HKT17_13805) rsmD 2951346..2951951 (-) 606 WP_105027420.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  HKT17_RS13805 (HKT17_13810) - 2951983..2953332 (-) 1350 WP_171100803.1 pitrilysin family protein -
  HKT17_RS13810 (HKT17_13815) - 2953396..2954808 (-) 1413 WP_171100805.1 pitrilysin family protein -
  HKT17_RS13815 (HKT17_13820) pilA 2954925..2955866 (+) 942 WP_171100807.1 signal recognition particle-docking protein FtsY Machinery gene
  HKT17_RS13820 (HKT17_13825) - 2955863..2956597 (+) 735 WP_105027423.1 cell division ATP-binding protein FtsE -
  HKT17_RS13825 (HKT17_13830) - 2956619..2957527 (+) 909 WP_105027424.1 ABC transporter permease -
  HKT17_RS13830 (HKT17_13835) - 2957708..2959114 (+) 1407 WP_205882439.1 Fic family protein -
  HKT17_RS13835 (HKT17_13840) rfbD 2959104..2960051 (-) 948 WP_171100811.1 dTDP-4-dehydrorhamnose reductase -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 33837.05 Da        Isoelectric Point: 6.8733

>NTDB_id=442911 HKT17_RS13815 WP_171100807.1 2954925..2955866(+) (pilA) [Limnobacter sp. SAORIC-580]
MQIPGQRQDWLGRLKSGLTKTRSGLTSMFTGEKVDEAFFEEMEERLLLADCGLPATELLMQKVRDTVYQKGLTRPEDVRL
VLRDSVFDLLRPLETSMGVDRARPLVMMVVGVNGAGKTTSIGKLANHYAEIGYSVLLAAGDTFRAAAREQLDVWAQRSNV
DVISAEGSDPGAVAFDSVQAGISRNKHIVICDTAGRLPTQLHLMEELKKIKKVLGKAKMDAPHEIVLVVDATNGQNALQQ
IKAFNDALTLTALVVTKLDGTAKGGILAAMSMSTRVPVAFIGVGEKMGDLRPFSPREFANALVGIDTDGNQTA

Nucleotide


Download         Length: 942 bp        

>NTDB_id=442911 HKT17_RS13815 WP_171100807.1 2954925..2955866(+) (pilA) [Limnobacter sp. SAORIC-580]
ATGCAGATTCCTGGGCAGAGACAGGACTGGCTTGGTCGTTTGAAATCGGGTTTGACCAAAACCCGTTCCGGCCTTACCTC
CATGTTCACCGGCGAAAAGGTCGATGAAGCCTTTTTCGAAGAAATGGAAGAACGCCTGCTGCTGGCCGATTGCGGCTTGC
CCGCCACCGAACTGCTGATGCAGAAAGTGCGCGACACGGTGTACCAGAAAGGCCTCACCCGGCCCGAAGACGTGCGCCTG
GTGCTGCGCGATTCGGTGTTCGATTTGCTGCGCCCCCTGGAAACCAGCATGGGCGTAGACCGTGCCCGCCCATTGGTCAT
GATGGTGGTGGGTGTAAACGGCGCAGGCAAAACTACCAGCATCGGCAAACTGGCCAACCACTATGCTGAAATTGGTTATT
CCGTTCTGTTGGCCGCTGGCGACACGTTTCGTGCAGCAGCCCGAGAACAACTGGATGTGTGGGCCCAACGCAGCAATGTC
GATGTCATTTCTGCCGAGGGCAGCGACCCCGGCGCAGTGGCATTCGACTCAGTACAGGCCGGTATTTCACGAAACAAACA
CATTGTGATTTGCGACACCGCAGGCCGCCTGCCCACGCAGCTTCACCTCATGGAAGAGCTGAAAAAAATCAAGAAAGTAC
TGGGCAAAGCCAAGATGGACGCACCCCACGAAATTGTGCTGGTGGTAGACGCCACCAATGGCCAAAACGCCTTGCAACAA
ATCAAGGCATTCAACGATGCACTTACACTGACCGCGCTGGTGGTCACCAAGCTGGACGGCACTGCCAAAGGCGGTATTCT
GGCTGCCATGAGCATGAGCACCCGCGTGCCCGTGGCCTTTATTGGCGTGGGAGAAAAAATGGGCGACCTGCGCCCTTTCA
GCCCCCGCGAATTTGCCAACGCCTTGGTTGGCATTGACACTGACGGAAACCAAACCGCATGA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(24-85)

SRP54-type protein, GTPase domain (SRP54)

(105-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A520T7B6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

55.518

95.527

0.53