Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   HKT17_RS13680 Genome accession   NZ_CP053084
Coordinates   2930720..2932240 (+) Length   506 a.a.
NCBI ID   WP_171100780.1    Uniprot ID   -
Organism   Limnobacter sp. SAORIC-580     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2925720..2937240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKT17_RS13655 (HKT17_13660) - 2927274..2928266 (+) 993 WP_171100774.1 SIS domain-containing protein -
  HKT17_RS13660 (HKT17_13665) - 2928266..2928805 (+) 540 WP_171100776.1 HAD family hydrolase -
  HKT17_RS13665 (HKT17_13670) lptC 2928802..2929389 (+) 588 WP_171100778.1 LPS export ABC transporter periplasmic protein LptC -
  HKT17_RS13670 (HKT17_13675) lptA 2929386..2929955 (+) 570 WP_105027397.1 lipopolysaccharide transport periplasmic protein LptA -
  HKT17_RS13675 (HKT17_13680) lptB 2929952..2930707 (+) 756 WP_008247838.1 LPS export ABC transporter ATP-binding protein -
  HKT17_RS13680 (HKT17_13685) rpoN/rpoN1 2930720..2932240 (+) 1521 WP_171100780.1 RNA polymerase factor sigma-54 Machinery gene
  HKT17_RS13685 (HKT17_13690) hpf 2932282..2932611 (+) 330 WP_105027399.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  HKT17_RS13690 (HKT17_13695) - 2932722..2933192 (+) 471 WP_040512070.1 PTS sugar transporter subunit IIA -
  HKT17_RS13695 (HKT17_13700) hprK 2933197..2934180 (+) 984 WP_171100782.1 HPr(Ser) kinase/phosphatase -
  HKT17_RS13700 (HKT17_13705) rapZ 2934173..2935042 (+) 870 WP_105027401.1 RNase adapter RapZ -
  HKT17_RS13705 (HKT17_13710) mutY 2934995..2936128 (-) 1134 WP_171100784.1 A/G-specific adenine glycosylase -
  HKT17_RS13710 (HKT17_13715) mutM 2936136..2936954 (-) 819 WP_171100786.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57116.39 Da        Isoelectric Point: 4.6632

>NTDB_id=442910 HKT17_RS13680 WP_171100780.1 2930720..2932240(+) (rpoN/rpoN1) [Limnobacter sp. SAORIC-580]
MKQSLQLKVSQNLTLTPQLQQSIRLLQLSTLELQQEIQQALAENPLLELADEEAAEGERTLSLDSSNGELHEPQGDSFEA
DPDPRKTSEPVSDQQAEQDNQSEEIVQRETIDSIQDNWEGDWRDNSGAGADGDEEKPGLQLAAPDSSLHQHLIDQLRMTQ
ASERDKNLVLWLIDYLSDDGYLTVELEDLWETLQDEPDLEFEELGAALRLLQSFDPPGVGARNAAECLLLQLAQRKDITC
QQSLYTHCQHIIRDHLGLLAQRDFTKLKKALNVDEDILKICHQIIRSLEPFPGARFRRIDDDHVVPDVIVKKLSGQWHVQ
LNPDVMPKIRINEMYASILRSHRGQSAQLSAQLQEARWLLKNVQQRFDTILRVSQAIVERQIGYFNHGEIAMQPLVLREI
ADLLGLHESTVSRVTTQKYMLTPYGLVELKYFFGSHVSTDSGGQASSTAIRALIKQLISAEDAKQPISDSQIADLLGQQG
IVVARRTVAKYRESLKIPPVNMRKSL

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=442910 HKT17_RS13680 WP_171100780.1 2930720..2932240(+) (rpoN/rpoN1) [Limnobacter sp. SAORIC-580]
ATGAAACAATCCCTTCAGCTTAAAGTCTCGCAAAACCTCACGCTCACGCCGCAGCTGCAGCAGTCCATTCGCTTGCTGCA
GTTGTCTACGCTCGAATTGCAGCAGGAAATTCAGCAGGCGCTGGCTGAAAACCCGCTGCTGGAGTTGGCCGACGAAGAGG
CTGCGGAAGGCGAGCGCACTTTAAGCCTGGACAGCAGCAATGGTGAACTGCATGAGCCGCAAGGCGACAGCTTTGAAGCC
GACCCCGACCCCCGCAAAACCAGCGAGCCGGTCAGCGACCAACAAGCCGAACAAGACAACCAGAGCGAAGAAATTGTTCA
GCGCGAAACCATCGACTCCATTCAAGACAACTGGGAAGGCGATTGGCGCGACAACAGCGGCGCCGGCGCCGACGGAGATG
AAGAAAAACCAGGCCTGCAACTGGCCGCCCCCGACAGCAGCCTGCACCAACACCTGATTGACCAGTTGCGCATGACGCAG
GCCAGTGAACGAGACAAAAACCTGGTGCTGTGGCTGATCGACTACCTCAGCGACGACGGCTACCTGACTGTTGAACTTGA
AGACCTGTGGGAAACCCTGCAGGACGAGCCTGACCTGGAGTTTGAAGAACTTGGCGCAGCCCTGCGCCTGCTGCAAAGTT
TTGACCCACCCGGTGTGGGTGCCCGCAATGCAGCGGAATGCCTGTTATTGCAACTGGCACAACGCAAAGACATCACCTGC
CAGCAAAGCCTTTACACACACTGCCAGCACATTATTCGTGATCACTTGGGCTTACTGGCCCAGCGCGACTTCACCAAGCT
GAAAAAAGCGCTGAATGTGGACGAAGACATACTGAAAATCTGTCACCAGATTATTCGCTCACTTGAGCCATTTCCCGGTG
CGCGCTTTCGCCGCATTGACGACGATCACGTTGTGCCCGACGTGATCGTGAAAAAACTCAGTGGTCAGTGGCATGTGCAA
CTGAACCCGGATGTGATGCCAAAAATTCGCATCAATGAAATGTATGCCTCCATTTTGCGATCTCACCGCGGCCAAAGCGC
CCAACTCAGCGCACAACTGCAAGAGGCCCGCTGGTTGTTAAAAAACGTTCAGCAGCGATTTGACACTATTTTACGGGTTA
GCCAAGCCATCGTAGAACGTCAAATCGGCTACTTCAATCACGGCGAAATCGCAATGCAGCCCTTGGTTCTGCGGGAAATT
GCCGATTTGCTGGGTCTGCATGAATCGACCGTGTCAAGGGTCACCACGCAAAAATATATGTTGACGCCCTATGGGTTGGT
TGAGCTAAAGTATTTCTTCGGAAGCCATGTTTCCACCGACTCAGGTGGTCAGGCTTCCAGCACGGCCATCCGTGCACTCA
TCAAGCAACTGATTTCTGCGGAGGACGCCAAGCAGCCGATATCTGACAGCCAAATCGCCGACCTACTCGGTCAACAGGGC
ATCGTGGTCGCAAGACGCACGGTCGCTAAATACCGGGAATCACTGAAAATACCCCCGGTGAACATGCGCAAGTCGCTTTA
A

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-49)

Sigma-54, DNA binding domain (Sigma54_DBD)

(349-504)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(141-335)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

57.73

100

0.583