Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HK408_RS14995 Genome accession   NZ_CP053079
Coordinates   3123738..3124367 (-) Length   209 a.a.
NCBI ID   WP_000839136.1    Uniprot ID   A0A0D8W3X3
Organism   Escherichia coli strain K56-43-un     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3118738..3129367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HK408_RS14980 (HK408_15010) helD 3118980..3121034 (-) 2055 WP_001538528.1 DNA helicase IV -
  HK408_RS14985 (HK408_15015) yccF 3121157..3121603 (+) 447 WP_001261236.1 YccF domain-containing protein -
  HK408_RS14990 (HK408_15020) yccS 3121613..3123775 (+) 2163 WP_000875041.1 YccS family putative transporter -
  HK408_RS14995 (HK408_15025) sxy/tfoX 3123738..3124367 (-) 630 WP_000839136.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HK408_RS15000 (HK408_15030) sulA 3124586..3125095 (+) 510 WP_000288723.1 SOS-induced cell division inhibitor SulA -
  HK408_RS15005 (HK408_15035) ompA 3125451..3126491 (+) 1041 WP_001313715.1 porin OmpA -
  HK408_RS15010 (HK408_15040) matP 3126569..3127021 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  HK408_RS15015 (HK408_15045) ycbZ 3127207..3128967 (+) 1761 WP_021522042.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24128.06 Da        Isoelectric Point: 9.2180

>NTDB_id=442866 HK408_RS14995 WP_000839136.1 3123738..3124367(-) (sxy/tfoX) [Escherichia coli strain K56-43-un]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=442866 HK408_RS14995 WP_000839136.1 3123738..3124367(-) (sxy/tfoX) [Escherichia coli strain K56-43-un]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTAACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D8W3X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99