Detailed information    

insolico Bioinformatically predicted

Overview


Name   clpC   Type   Regulator
Locus tag   HHM66_RS09905 Genome accession   NZ_CP053074
Coordinates   2015551..2017995 (-) Length   814 a.a.
NCBI ID   WP_015058108.1    Uniprot ID   A0AB33R7Z5
Organism   Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A88     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2013422..2056521 2015551..2017995 within 0


Gene organization within MGE regions


Location: 2013422..2056521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHM66_RS09895 (HHM66_09920) groL 2013422..2015047 (-) 1626 WP_012767614.1 chaperonin GroEL -
  HHM66_RS09900 (HHM66_09925) groES 2015083..2015373 (-) 291 WP_003054738.1 co-chaperone GroES -
  HHM66_RS09905 (HHM66_09930) clpC 2015551..2017995 (-) 2445 WP_015058108.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  HHM66_RS09910 (HHM66_09935) - 2017995..2018456 (-) 462 WP_003054759.1 CtsR family transcriptional regulator -
  HHM66_RS09915 (HHM66_09940) - 2018652..2018855 (-) 204 WP_003053018.1 cold-shock protein -
  HHM66_RS09920 (HHM66_09945) - 2019356..2020240 (+) 885 WP_256096233.1 amidohydrolase family protein -
  HHM66_RS09925 (HHM66_09950) - 2020285..2021771 (-) 1487 Protein_1912 IS1182 family transposase -
  HHM66_RS09930 (HHM66_09955) - 2021795..2022055 (-) 261 Protein_1913 DUF4355 domain-containing protein -
  HHM66_RS09935 (HHM66_09960) - 2022193..2022417 (-) 225 WP_015058113.1 hypothetical protein -
  HHM66_RS09940 (HHM66_09965) - 2022470..2022889 (-) 420 WP_015058114.1 HD domain-containing protein -
  HHM66_RS09945 (HHM66_09970) - 2022886..2023092 (-) 207 WP_015058115.1 hypothetical protein -
  HHM66_RS09950 (HHM66_09975) - 2023094..2024338 (-) 1245 WP_015058116.1 phage head morphogenesis protein -
  HHM66_RS09955 (HHM66_09980) - 2024339..2024602 (+) 264 Protein_1918 tyrosine-type recombinase/integrase -
  HHM66_RS09960 (HHM66_09985) - 2024780..2025850 (-) 1071 WP_000179397.1 site-specific integrase -
  HHM66_RS09965 (HHM66_09990) - 2025972..2026376 (-) 405 WP_001173134.1 DUF4429 domain-containing protein -
  HHM66_RS09970 (HHM66_09995) - 2026429..2026809 (-) 381 WP_000762727.1 ImmA/IrrE family metallo-endopeptidase -
  HHM66_RS09975 (HHM66_10000) - 2026816..2027178 (-) 363 WP_000114553.1 helix-turn-helix transcriptional regulator -
  HHM66_RS09980 (HHM66_10005) - 2027464..2027628 (+) 165 WP_000511144.1 hypothetical protein -
  HHM66_RS09985 (HHM66_10010) - 2027611..2028081 (-) 471 WP_001052630.1 hypothetical protein -
  HHM66_RS09990 (HHM66_10015) - 2028142..2028351 (+) 210 WP_000082755.1 helix-turn-helix transcriptional regulator -
  HHM66_RS09995 (HHM66_10020) - 2028354..2029064 (+) 711 WP_001002368.1 ORF6C domain-containing protein -
  HHM66_RS10000 (HHM66_10025) - 2029124..2029408 (+) 285 WP_000998973.1 hypothetical protein -
  HHM66_RS10005 (HHM66_10030) - 2029425..2029640 (+) 216 WP_001061697.1 hypothetical protein -
  HHM66_RS10010 (HHM66_10035) dnaB 2029649..2030980 (+) 1332 WP_000343908.1 replicative DNA helicase -
  HHM66_RS10015 (HHM66_10040) - 2030980..2031585 (+) 606 WP_000988139.1 hypothetical protein -
  HHM66_RS10020 (HHM66_10045) - 2031563..2032309 (+) 747 WP_000079054.1 conserved phage C-terminal domain-containing protein -
  HHM66_RS10025 (HHM66_10050) - 2032310..2033131 (+) 822 WP_001067867.1 ATP-binding protein -
  HHM66_RS10030 (HHM66_10055) - 2033131..2033193 (+) 63 Protein_1933 DNA cytosine methyltransferase -
  HHM66_RS10040 (HHM66_10065) - 2033322..2033813 (+) 492 WP_000169322.1 MazG-like family protein -
  HHM66_RS10045 (HHM66_10070) - 2033813..2034142 (+) 330 WP_000793494.1 DUF1372 family protein -
  HHM66_RS11100 - 2034142..2034498 (+) 357 WP_000158822.1 DUF3310 domain-containing protein -
  HHM66_RS10055 (HHM66_10080) - 2034495..2034701 (+) 207 WP_000748199.1 hypothetical protein -
  HHM66_RS10060 (HHM66_10085) ssb 2034691..2035107 (+) 417 WP_000609565.1 single-stranded DNA-binding protein Machinery gene
  HHM66_RS10065 (HHM66_10090) - 2035117..2035377 (+) 261 WP_001008140.1 hypothetical protein -
  HHM66_RS10070 (HHM66_10095) - 2035374..2035721 (+) 348 WP_000776714.1 helix-turn-helix transcriptional regulator -
  HHM66_RS10075 (HHM66_10100) - 2035718..2036182 (+) 465 WP_000163169.1 hypothetical protein -
  HHM66_RS10080 (HHM66_10105) - 2036292..2036834 (+) 543 WP_001028147.1 site-specific integrase -
  HHM66_RS10085 (HHM66_10110) - 2037124..2037411 (+) 288 WP_000651009.1 hypothetical protein -
  HHM66_RS10090 (HHM66_10115) - 2037534..2037770 (+) 237 WP_223846017.1 HNH endonuclease -
  HHM66_RS10095 (HHM66_10120) - 2037858..2038343 (+) 486 WP_170172081.1 hypothetical protein -
  HHM66_RS10100 (HHM66_10125) - 2038336..2040048 (+) 1713 WP_000230004.1 terminase TerL endonuclease subunit -
  HHM66_RS10105 (HHM66_10130) - 2040057..2041199 (+) 1143 WP_001067328.1 phage portal protein -
  HHM66_RS10110 (HHM66_10135) - 2041249..2041791 (+) 543 WP_000413200.1 HK97 family phage prohead protease -
  HHM66_RS10115 (HHM66_10140) - 2041802..2043064 (+) 1263 WP_000749070.1 phage major capsid protein -
  HHM66_RS10120 (HHM66_10145) - 2043085..2043420 (+) 336 WP_000153862.1 hypothetical protein -
  HHM66_RS10125 (HHM66_10150) - 2043417..2043722 (+) 306 WP_000842789.1 head-tail adaptor protein -
  HHM66_RS10130 (HHM66_10155) - 2043722..2044069 (+) 348 WP_001074486.1 hypothetical protein -
  HHM66_RS10135 (HHM66_10160) - 2044056..2044400 (+) 345 WP_000508738.1 hypothetical protein -
  HHM66_RS10140 (HHM66_10165) - 2044415..2045098 (+) 684 WP_000222195.1 hypothetical protein -
  HHM66_RS10145 (HHM66_10170) - 2045098..2045574 (+) 477 WP_000591558.1 hypothetical protein -
  HHM66_RS11065 - 2045613..2045741 (+) 129 WP_011058372.1 hypothetical protein -
  HHM66_RS10150 (HHM66_10175) - 2045760..2048495 (+) 2736 WP_000140779.1 phage tail tape measure protein -
  HHM66_RS10155 (HHM66_10180) - 2048492..2049214 (+) 723 WP_000161557.1 hypothetical protein -
  HHM66_RS10160 (HHM66_10185) - 2049215..2052889 (+) 3675 WP_170172082.1 phage tail spike protein -
  HHM66_RS10165 (HHM66_10190) - 2052906..2053136 (+) 231 WP_001071121.1 hypothetical protein -
  HHM66_RS10170 (HHM66_10195) - 2053139..2053477 (+) 339 WP_000213866.1 hypothetical protein -
  HHM66_RS10175 (HHM66_10200) - 2053512..2053922 (+) 411 WP_001135353.1 hypothetical protein -
  HHM66_RS10180 (HHM66_10205) - 2053925..2054254 (+) 330 WP_000192161.1 phage holin -
  HHM66_RS10185 (HHM66_10210) - 2054258..2055664 (+) 1407 WP_000405192.1 peptidoglycan amidohydrolase family protein -
  HHM66_RS10190 (HHM66_10215) - 2055871..2056056 (+) 186 WP_000139836.1 type II toxin-antitoxin system HicA family toxin -
  HHM66_RS10195 (HHM66_10220) - 2056117..2056521 (+) 405 WP_000878126.1 type II toxin-antitoxin system HicB family antitoxin -

Sequence


Protein


Download         Length: 814 a.a.        Molecular weight: 90337.03 Da        Isoelectric Point: 6.8331

>NTDB_id=442801 HHM66_RS09905 WP_015058108.1 2015551..2017995(-) (clpC) [Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A88]
MIMYSLKMQEIFRQAQFQAARFDSQYLETWHILLAMARVDHSLAGLVLSEFDAKVAVEEYEAAAILAMGKSPKYQVSHID
FRPQSKTLTNLLQFAQAISQVTKDQEVGSEHVLFAILLNPDIMATRLLEMAGYTIKDKGNGEPRLADLRKAIEIHAGYSK
EIIKAIHELRKPKKTKNQGSFSDMMKPPSTAGDLADFTRDLTEMASQGLLEPVIGRDAEVSRMIQVLSRKTKNNPVLVGD
AGVGKTALAYGLAQRIANGAIPYELQDMRVLELDMMSVVAGTRFRGDFEERMNQIIDDIESDGKIILFVDELHTIMGSGS
GIDSTLDAANILKPALSRGTLHMVGATTQEEYQKHIEKDAALSRRFAKILIEEPNVEDAYQILLGLKGSYETYHNVTIAN
QAVRTAVKMAHRYLTSKNLPDSAIDLLDEASATVQGMVKKSRPEIITPLDQALIDGDMKKASRLLAKDVKGQHRKPTAVT
EEDILTTLSKLSGIPLEKLSQADSKKYLNLEKELHKRVIGQEDAVSAISRAIRRNQSGIRTGKRPIGSFMFLGPTGVGKT
ELAKALAEVLFDAASALIRFDMSEYMEKFAASRLNGAPPGYVGYDEGGELTEKVRNKPYSVLLFDEVEKAHPDIFNVLLQ
VLDDGMLTDSRGRKVDFSNTIIIMTSNLGATALRDDKTVGFGAKGISHDHQAMEKRILEELKKAYRPEFINRIDEKVVFH
SLTQDNMREVVKIMVQPLMATLAEKGITLKFQPMALKYLSEEGYDVEMGARPLRRTLQTQVEDKLSELILAGELASGHTL
KIGLSHGKLSFNLE

Nucleotide


Download         Length: 2445 bp        

>NTDB_id=442801 HHM66_RS09905 WP_015058108.1 2015551..2017995(-) (clpC) [Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A88]
ATGATCATGTATTCATTGAAGATGCAAGAAATTTTCAGGCAGGCGCAGTTTCAAGCAGCCCGCTTTGATAGCCAATACCT
AGAAACTTGGCATATATTGCTAGCTATGGCGAGGGTTGACCACTCCCTAGCGGGTTTGGTGCTAAGCGAATTTGATGCTA
AGGTTGCAGTGGAAGAATATGAGGCTGCAGCTATTTTAGCGATGGGCAAAAGTCCTAAATACCAAGTGTCTCACATTGAC
TTTAGGCCTCAGTCAAAAACCTTAACGAACCTTTTGCAATTTGCCCAAGCTATCAGTCAAGTCACCAAAGACCAAGAGGT
AGGTTCAGAGCATGTTCTCTTTGCCATTTTGCTTAATCCAGATATTATGGCTACTCGCTTATTAGAGATGGCGGGTTATA
CTATCAAGGATAAAGGAAACGGGGAGCCTCGCTTAGCTGATTTACGAAAAGCTATCGAGATTCATGCAGGCTATAGCAAG
GAAATAATTAAGGCTATCCACGAGTTGCGTAAGCCAAAGAAAACCAAAAATCAAGGTTCTTTTTCAGACATGATGAAGCC
ACCAAGCACGGCTGGGGACTTGGCGGACTTTACACGTGATTTGACCGAGATGGCAAGCCAAGGTCTCTTAGAGCCAGTTA
TTGGCCGTGATGCTGAAGTGTCACGGATGATTCAAGTACTGAGTCGTAAAACAAAGAATAACCCTGTTCTTGTGGGTGAT
GCAGGTGTGGGTAAAACGGCCCTTGCCTACGGCCTAGCCCAACGTATTGCTAATGGTGCTATTCCTTATGAGCTGCAAGA
CATGCGTGTTCTAGAATTAGACATGATGAGTGTTGTTGCGGGGACCCGTTTTCGTGGGGATTTTGAAGAGCGCATGAATC
AAATCATTGACGATATTGAGTCAGATGGCAAAATTATTCTCTTCGTAGATGAATTGCACACCATTATGGGATCAGGAAGT
GGTATTGATAGCACGCTTGATGCTGCCAATATTTTAAAACCAGCCTTATCTCGTGGAACCCTCCATATGGTGGGTGCAAC
AACGCAGGAAGAATACCAAAAACACATTGAAAAAGATGCCGCTCTTTCGCGCCGCTTTGCTAAGATTTTAATTGAAGAAC
CTAATGTAGAAGATGCTTATCAGATTCTGCTAGGACTAAAAGGCTCTTACGAGACTTACCATAATGTGACCATTGCTAAT
CAGGCTGTTAGAACCGCTGTGAAAATGGCACATCGCTATCTGACCAGCAAAAACCTTCCGGATTCTGCCATTGATTTGTT
GGATGAAGCCAGTGCTACAGTGCAAGGTATGGTTAAAAAATCTAGGCCAGAAATCATCACGCCATTAGATCAAGCTTTGA
TTGATGGCGATATGAAGAAGGCCTCTCGTTTGTTGGCAAAAGACGTTAAAGGGCAACATCGCAAGCCAACAGCTGTGACA
GAAGAGGACATCCTGACGACCTTGAGCAAGCTATCAGGTATTCCACTGGAAAAACTCAGCCAAGCTGATAGCAAAAAATA
CCTTAATTTGGAAAAAGAACTGCATAAGCGCGTGATTGGGCAAGAAGATGCTGTCTCAGCTATTTCTAGAGCCATTCGCC
GTAATCAGTCAGGCATTCGTACAGGTAAACGTCCAATCGGTTCTTTCATGTTCCTTGGTCCAACAGGGGTTGGTAAGACC
GAGTTGGCAAAAGCCTTGGCAGAAGTTCTCTTTGATGCCGCGTCCGCCCTTATCCGCTTTGATATGTCAGAGTATATGGA
GAAATTTGCGGCTTCTCGCCTTAATGGCGCACCTCCAGGCTATGTTGGTTACGATGAAGGTGGTGAATTAACAGAGAAGG
TCAGAAACAAGCCTTATTCTGTGCTCCTCTTTGACGAGGTGGAAAAAGCTCACCCTGATATTTTCAACGTCCTCTTACAA
GTGCTTGATGATGGCATGTTGACAGATAGCCGTGGGCGTAAAGTGGACTTCTCAAATACCATTATTATCATGACAAGTAA
TCTAGGGGCAACAGCTCTGCGTGATGATAAAACAGTTGGCTTTGGGGCAAAAGGCATTAGCCATGACCACCAAGCCATGG
AAAAACGGATTTTGGAAGAGTTGAAAAAAGCTTACCGACCAGAATTTATCAACCGAATTGATGAAAAGGTTGTCTTCCAC
AGCCTCACTCAGGACAATATGAGAGAAGTAGTCAAGATTATGGTGCAGCCGTTGATGGCTACTTTGGCAGAAAAAGGCAT
TACCCTCAAATTCCAGCCAATGGCCCTCAAGTATTTATCAGAAGAAGGGTATGATGTGGAAATGGGTGCTCGTCCATTAC
GCCGCACTTTGCAAACTCAGGTGGAAGATAAATTGTCTGAATTGATTCTTGCTGGTGAATTGGCAAGTGGTCATACCCTG
AAAATTGGCCTTTCTCATGGAAAACTCAGCTTTAACCTTGAGTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Streptococcus mutans UA159

76.384

99.877

0.763

  clpC Streptococcus thermophilus LMG 18311

72.672

100

0.729

  clpC Streptococcus thermophilus LMD-9

72.672

100

0.729

  clpC Streptococcus pneumoniae TIGR4

67.036

99.877

0.67

  clpC Streptococcus pneumoniae Rx1

67.036

99.877

0.67

  clpC Streptococcus pneumoniae D39

67.036

99.877

0.67

  clpC Lactococcus lactis subsp. lactis strain DGCC12653

48.681

100

0.499

  clpC Bacillus subtilis subsp. subtilis str. 168

42.72

100

0.436