Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DSM104440_RS12570 Genome accession   NZ_CP053073
Coordinates   2577335..2578693 (-) Length   452 a.a.
NCBI ID   WP_171163137.1    Uniprot ID   A0A6M4H7W3
Organism   Usitatibacter palustris strain Swamp67     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2572335..2583693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSM104440_RS12550 (DSM104440_02481) - 2572873..2573631 (+) 759 WP_171163128.1 SDR family NAD(P)-dependent oxidoreductase -
  DSM104440_RS12555 (DSM104440_02482) - 2573755..2575083 (+) 1329 WP_171163130.1 adenylate/guanylate cyclase domain-containing protein -
  DSM104440_RS12560 (DSM104440_02483) - 2575080..2575967 (+) 888 WP_171163132.1 TssQ family T6SS-associated lipoprotein -
  DSM104440_RS12565 (DSM104440_02484) - 2575970..2577334 (+) 1365 WP_171163135.1 serine/threonine-protein kinase -
  DSM104440_RS12570 (DSM104440_02485) radA 2577335..2578693 (-) 1359 WP_171163137.1 DNA repair protein RadA Machinery gene
  DSM104440_RS12575 (DSM104440_02486) alr 2578693..2579766 (-) 1074 WP_171163139.1 alanine racemase -
  DSM104440_RS12580 (DSM104440_02487) dnaB 2579773..2582220 (-) 2448 WP_171165940.1 replicative DNA helicase -
  DSM104440_RS12585 (DSM104440_02488) rplI 2582442..2582891 (-) 450 WP_171163141.1 50S ribosomal protein L9 -
  DSM104440_RS12590 (DSM104440_02489) rpsR 2582902..2583201 (-) 300 WP_171163143.1 30S ribosomal protein S18 -
  DSM104440_RS12595 (DSM104440_02490) priB 2583204..2583509 (-) 306 WP_171163145.1 primosomal replication protein N -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 47962.53 Da        Isoelectric Point: 7.9597

>NTDB_id=442742 DSM104440_RS12570 WP_171163137.1 2577335..2578693(-) (radA) [Usitatibacter palustris strain Swamp67]
MAKIKTVYACTECGGQSLKWQGQCPHCSAWNTLVESTTEPKAGGHRFASLAGSSEVVTLADVEAKDFPRLPTMIGEFDRV
LGGGLVEGGVVLIGGDPGIGKSTLLLQAAARLSAQVPVLYVSGEESAQQIALRARRLGLDASAVKLLPEIELEKIQATLA
SMKPRVAVIDSIQTLYSSALTSAPGSVAQVRECAAQITRLAKQTGITVVFVGHVTKEGALAGPRVLEHMVDTVLYFEGDT
HTTFRLVRAVKNRFGAVNELGVFAMTEKGLREVTNPSALFLSQHATDVAGSCVMVTQEGTRPLLVELQALVDDSHGMSPK
RLTVGLELNRLAMLLAVLHRHAGIACFDQDVFVNAVGGVRIAEPGADLAVTLAIVSSLRSKPLPGKHVVFGEVGLAGEVR
PVQRGQERLKEAAKLGFTHAIVPAANKPRQPIAGLEVIAVERLSEAVDYVRK

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=442742 DSM104440_RS12570 WP_171163137.1 2577335..2578693(-) (radA) [Usitatibacter palustris strain Swamp67]
GTGGCCAAGATCAAGACGGTGTACGCCTGCACGGAGTGCGGCGGGCAGTCGCTCAAGTGGCAGGGCCAGTGTCCGCACTG
CAGCGCCTGGAACACGCTGGTGGAATCGACGACGGAGCCCAAGGCGGGCGGCCATCGCTTCGCGAGCCTCGCGGGCTCGA
GCGAGGTCGTGACCCTCGCCGACGTGGAGGCGAAGGACTTTCCGCGCCTTCCCACGATGATTGGCGAGTTCGATCGCGTG
CTCGGAGGCGGCCTGGTCGAGGGTGGCGTGGTCCTCATCGGCGGCGACCCGGGCATCGGCAAGTCGACGCTGCTGCTGCA
AGCCGCGGCACGCCTCTCCGCGCAAGTGCCCGTCCTGTACGTGAGCGGCGAAGAATCGGCGCAGCAGATCGCGCTGCGCG
CGCGCCGCCTTGGGCTCGATGCGTCCGCGGTGAAGCTCCTGCCGGAGATCGAGCTCGAGAAGATCCAGGCCACGCTTGCG
TCGATGAAGCCGCGCGTCGCGGTCATCGATTCCATCCAGACGCTCTATTCCTCCGCGCTCACCTCGGCGCCGGGGTCGGT
CGCGCAGGTGCGCGAATGCGCCGCGCAGATCACTCGCCTCGCCAAGCAAACCGGGATCACCGTCGTGTTCGTGGGCCATG
TCACGAAAGAGGGCGCGCTCGCAGGACCGCGCGTCCTCGAGCACATGGTCGACACGGTCCTCTACTTCGAGGGCGACACG
CACACCACGTTCCGCCTGGTGCGCGCGGTCAAGAACCGCTTTGGCGCGGTGAACGAGCTCGGCGTCTTCGCGATGACGGA
GAAGGGCCTGCGCGAAGTGACCAATCCTTCCGCGCTCTTTCTTTCGCAGCACGCCACGGACGTGGCCGGTTCCTGTGTGA
TGGTCACGCAGGAGGGCACGCGCCCGTTGCTCGTGGAGCTCCAGGCGCTGGTGGACGACTCGCACGGCATGAGCCCCAAG
CGGCTCACGGTAGGCCTCGAGCTCAATCGCCTGGCGATGCTGCTTGCGGTCCTGCATCGCCACGCGGGCATCGCCTGCTT
CGACCAGGACGTGTTCGTGAATGCCGTCGGCGGTGTTCGCATCGCCGAGCCGGGCGCCGACCTCGCCGTGACGCTGGCGA
TCGTCTCGAGCCTGCGCAGCAAGCCGCTGCCGGGCAAGCACGTGGTGTTCGGTGAAGTAGGGCTCGCGGGCGAGGTCCGT
CCCGTCCAGCGGGGCCAGGAGCGCCTGAAGGAAGCGGCGAAGCTCGGCTTCACGCACGCGATCGTTCCGGCCGCGAACAA
GCCGCGGCAACCCATTGCCGGGCTCGAGGTGATTGCGGTGGAGCGCCTCTCGGAGGCGGTCGACTACGTGCGCAAGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(79-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(359-426)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M4H7W3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.766

100

0.513
  radA Streptococcus mitis SK321

47.894

99.779

0.478
  radA Streptococcus mitis NCTC 12261

47.672

99.779

0.476
  radA Streptococcus pneumoniae TIGR4

49.645

93.584

0.465
  radA Streptococcus pneumoniae D39

49.645

93.584

0.465
  radA Streptococcus pneumoniae Rx1

49.645

93.584

0.465
  radA Streptococcus pneumoniae R6

49.645

93.584

0.465