Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   DSM104440_RS00180 Genome accession   NZ_CP053073
Coordinates   40431..40832 (+) Length   133 a.a.
NCBI ID   WP_281357015.1    Uniprot ID   A0A6M4H1N2
Organism   Usitatibacter palustris strain Swamp67     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 35431..45832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSM104440_RS00150 - 35461..36051 (+) 591 WP_246212069.1 c-type cytochrome -
  DSM104440_RS00155 (DSM104440_00032) - 36048..37169 (-) 1122 WP_171159622.1 GGDEF domain-containing protein -
  DSM104440_RS00160 (DSM104440_00033) hemL 37177..38469 (-) 1293 WP_171159624.1 glutamate-1-semialdehyde 2,1-aminomutase -
  DSM104440_RS00165 (DSM104440_00034) thiE 38438..39112 (-) 675 WP_171159626.1 thiamine phosphate synthase -
  DSM104440_RS00170 (DSM104440_00035) - 39102..39935 (-) 834 WP_171159628.1 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase -
  DSM104440_RS00175 (DSM104440_00036) - 40080..40277 (+) 198 WP_171159630.1 rubredoxin -
  DSM104440_RS00180 (DSM104440_00037) pilG 40431..40832 (+) 402 WP_281357015.1 response regulator Regulator
  DSM104440_RS00185 (DSM104440_00038) - 40866..41231 (+) 366 WP_171159632.1 response regulator -
  DSM104440_RS00190 (DSM104440_00039) - 41247..41759 (+) 513 WP_171159635.1 chemotaxis protein CheW -
  DSM104440_RS00195 (DSM104440_00040) - 41784..44039 (+) 2256 WP_171159637.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14641.98 Da        Isoelectric Point: 7.8841

>NTDB_id=442726 DSM104440_RS00180 WP_281357015.1 40431..40832(+) (pilG) [Usitatibacter palustris strain Swamp67]
MADSKNLTGVRVMVIDDSNTIRRSAEIFLMQAGCQVILAENGFDALAKIADHQPDLIFVDIMMPRLDGYQTCALIKKSGR
HGATPVIMLSSKDSLFDRARGRMVGSDEYLTKPFTKESLLKAVETHLAQKNAA

Nucleotide


Download         Length: 402 bp        

>NTDB_id=442726 DSM104440_RS00180 WP_281357015.1 40431..40832(+) (pilG) [Usitatibacter palustris strain Swamp67]
GTGGCGGACTCCAAGAACCTCACGGGCGTGCGCGTGATGGTGATCGATGACAGCAACACCATCCGGCGGAGCGCGGAGAT
ATTTCTCATGCAGGCCGGCTGCCAGGTCATCCTCGCGGAGAACGGCTTCGACGCGCTCGCGAAGATCGCCGACCACCAGC
CCGACCTCATCTTCGTCGACATCATGATGCCGAGGCTCGACGGCTACCAGACGTGCGCGCTCATAAAGAAGAGCGGCCGG
CACGGGGCCACGCCGGTGATCATGCTTTCCTCGAAAGACAGCCTTTTTGACCGTGCGCGCGGGCGCATGGTCGGCAGCGA
CGAATACCTGACCAAGCCCTTCACGAAGGAAAGCCTCCTGAAGGCGGTCGAGACGCACCTCGCGCAGAAGAACGCGGCGT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(12-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M4H1N2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

65.833

90.226

0.594