Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   HJ592_RS00560 Genome accession   NZ_CP053072
Coordinates   148448..150289 (+) Length   613 a.a.
NCBI ID   WP_085461723.1    Uniprot ID   -
Organism   Bifidobacterium adolescentis strain PRL2019     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 143448..155289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HJ592_RS00535 thiF 143465..144178 (-) 714 WP_003807371.1 sulfur carrier protein ThiS adenylyltransferase ThiF -
  HJ592_RS00540 thiS 144231..144425 (-) 195 WP_003807372.1 sulfur carrier protein ThiS -
  HJ592_RS00545 - 144861..145883 (+) 1023 WP_021912917.1 aldo/keto reductase -
  HJ592_RS00550 - 146067..146558 (+) 492 WP_003807375.1 MarR family transcriptional regulator -
  HJ592_RS00555 rcrP 146685..148436 (+) 1752 WP_021912918.1 ABC transporter ATP-binding protein Regulator
  HJ592_RS00560 rcrQ 148448..150289 (+) 1842 WP_085461723.1 ABC transporter ATP-binding protein Regulator
  HJ592_RS00565 - 150460..151440 (+) 981 WP_085407463.1 aldo/keto reductase -
  HJ592_RS00570 - 151454..152506 (-) 1053 WP_055680362.1 FAD:protein FMN transferase -
  HJ592_RS00575 - 153349..155034 (+) 1686 WP_236837525.1 FTR1 family protein -

Sequence

Protein


Download         Length: 613 a.a.        Molecular weight: 67339.11 Da        Isoelectric Point: 6.7614

>NTDB_id=442721 HJ592_RS00560 WP_085461723.1 148448..150289(+) (rcrQ) [Bifidobacterium adolescentis strain PRL2019]
MPRGMGRGRGAVEKPKDFGGVMKKLVKFCSRYIPVMILALVLGAAGTVCQIIGPDKLKDMTNEITKGLPAMVHGKPVMNS
IDMDAVSRIAWLLVALYVGYALLSYLQSWLMANVTQRTAQQLREAISQKINRLPLKYFDKVSYGDVLSRITNDVDAIGQT
LGQSVGSLITSITLFVGALIMMFYNNVTMTLCAIGSALLGLIIMGVIMKVSQKYFTRQQVALGDVNGHVEEMYTGHTVVK
AYCGEERSIEQFEKYNKDLYVSGWKSQFLSGLMMPIMNFVGNFGYVVVCVVGAALAMDGNIEFGVIVAFMMYIRLFTQPL
SQFAQAFQNLQRCAAASERVFGFLEEPELSDETGKQALLGVGADGKPRPVRGDVEFSHVRFGYDADKTIINDFSASVKAG
QKVAIVGPTGAGKTTMVNLLMRFYEISGGTISIDGIDTKSVPRWNVHDQFSMVLQDTWVFRGTVRENIAYSKKDVTDEQI
VAACKAVGLHHYIMSLPNGYDTVLDDKASLSQGQRQLLTIARAMVEDAPILILDEATSSVDTRTEELIQKAMDALTVGRT
SFVIAHRLSTIRDADMILVMNGGDIVERGTHEELLAKGGFYADIYNSQFTLAE

Nucleotide


Download         Length: 1842 bp        

>NTDB_id=442721 HJ592_RS00560 WP_085461723.1 148448..150289(+) (rcrQ) [Bifidobacterium adolescentis strain PRL2019]
ATGCCAAGAGGAATGGGACGCGGCCGTGGGGCCGTGGAAAAGCCGAAGGACTTCGGCGGAGTGATGAAGAAGCTCGTGAA
ATTCTGCAGCCGGTACATTCCGGTGATGATTCTCGCGCTGGTTCTGGGCGCTGCCGGCACGGTGTGCCAGATCATCGGCC
CGGACAAGCTCAAGGACATGACCAACGAGATCACGAAGGGTCTGCCGGCCATGGTGCACGGCAAGCCCGTCATGAATTCG
ATCGATATGGACGCGGTGTCGCGCATCGCATGGCTGCTCGTCGCGCTGTACGTCGGGTACGCGCTGCTGAGCTACCTGCA
AAGCTGGCTGATGGCCAACGTCACGCAACGCACGGCACAGCAGCTGCGTGAGGCGATCAGCCAGAAAATCAATCGCCTGC
CGCTGAAATATTTCGACAAAGTCAGCTACGGCGACGTGCTGAGCCGCATCACCAACGACGTCGACGCGATCGGACAGACG
CTCGGCCAGTCGGTCGGCTCGCTGATCACTTCGATCACGCTGTTCGTCGGCGCGCTCATCATGATGTTCTACAACAACGT
GACCATGACGCTGTGCGCCATCGGCTCCGCGCTGCTCGGCCTGATCATCATGGGCGTGATCATGAAGGTGTCGCAGAAGT
ACTTCACCCGCCAGCAGGTGGCGCTCGGCGACGTCAACGGCCACGTCGAGGAAATGTACACCGGCCACACCGTGGTCAAG
GCATACTGCGGCGAGGAACGCTCCATCGAGCAGTTCGAGAAGTACAACAAAGACCTGTACGTGTCCGGCTGGAAAAGCCA
GTTCCTGTCCGGCCTGATGATGCCGATCATGAACTTCGTCGGCAACTTCGGCTACGTGGTGGTGTGCGTGGTCGGCGCGG
CGCTCGCCATGGACGGCAATATCGAATTCGGCGTGATCGTGGCGTTCATGATGTATATCCGCCTGTTCACGCAGCCGCTG
TCCCAGTTCGCGCAGGCGTTCCAGAACCTGCAGCGCTGCGCGGCCGCATCCGAACGCGTCTTCGGCTTCCTTGAGGAGCC
GGAACTGTCCGACGAAACCGGCAAGCAGGCGCTGCTCGGCGTCGGTGCGGACGGCAAGCCGCGGCCGGTGCGCGGCGACG
TGGAATTCAGCCACGTGCGCTTCGGCTACGACGCGGACAAGACCATCATCAACGACTTCTCCGCGTCCGTGAAGGCCGGC
CAGAAGGTGGCCATCGTCGGCCCGACCGGCGCCGGCAAGACCACCATGGTGAACCTGCTGATGCGCTTCTACGAGATTTC
CGGTGGCACGATTTCGATCGACGGCATCGACACCAAGTCCGTACCGCGTTGGAACGTGCACGACCAGTTCTCCATGGTGC
TGCAGGACACGTGGGTGTTCCGTGGAACAGTGCGTGAAAACATCGCGTATTCGAAGAAGGACGTCACCGACGAGCAGATC
GTGGCCGCATGCAAGGCCGTCGGCCTGCACCATTACATCATGTCGCTGCCGAACGGCTACGACACCGTGCTCGACGACAA
GGCGTCGCTTTCCCAGGGCCAGCGTCAGCTGCTGACGATCGCGCGAGCGATGGTGGAGGACGCGCCGATCCTGATCCTCG
ACGAGGCCACCTCGTCTGTCGACACCCGTACCGAAGAGCTGATTCAGAAGGCGATGGACGCGCTGACCGTGGGCCGCACG
AGCTTCGTGATCGCGCACCGCCTGTCCACCATCCGCGACGCCGACATGATCCTGGTGATGAACGGCGGCGACATCGTGGA
ACGCGGCACGCACGAGGAACTGCTCGCCAAGGGCGGCTTCTACGCCGACATCTACAACAGCCAGTTCACGCTGGCCGAGT
GA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(391-538)

ABC transporter transmembrane region (ABC_membrane)

(36-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.653

96.411

0.527