Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   HJ592_RS00555 Genome accession   NZ_CP053072
Coordinates   146685..148436 (+) Length   583 a.a.
NCBI ID   WP_021912918.1    Uniprot ID   -
Organism   Bifidobacterium adolescentis strain PRL2019     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 141685..153436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HJ592_RS00530 - 142394..143308 (-) 915 WP_080755263.1 thiazole synthase -
  HJ592_RS00535 thiF 143465..144178 (-) 714 WP_003807371.1 sulfur carrier protein ThiS adenylyltransferase ThiF -
  HJ592_RS00540 thiS 144231..144425 (-) 195 WP_003807372.1 sulfur carrier protein ThiS -
  HJ592_RS00545 - 144861..145883 (+) 1023 WP_021912917.1 aldo/keto reductase -
  HJ592_RS00550 - 146067..146558 (+) 492 WP_003807375.1 MarR family transcriptional regulator -
  HJ592_RS00555 rcrP 146685..148436 (+) 1752 WP_021912918.1 ABC transporter ATP-binding protein Regulator
  HJ592_RS00560 rcrQ 148448..150289 (+) 1842 WP_085461723.1 ABC transporter ATP-binding protein Regulator
  HJ592_RS00565 - 150460..151440 (+) 981 WP_085407463.1 aldo/keto reductase -
  HJ592_RS00570 - 151454..152506 (-) 1053 WP_055680362.1 FAD:protein FMN transferase -

Sequence

Protein


Download         Length: 583 a.a.        Molecular weight: 64393.45 Da        Isoelectric Point: 5.3060

>NTDB_id=442720 HJ592_RS00555 WP_021912918.1 146685..148436(+) (rcrP) [Bifidobacterium adolescentis strain PRL2019]
MLRIVRYLSKAEIGQMLVALVSIVGQIWLDLTLPDYMADITQLVETPGSEMHDIWVAGGKMLLVSLGSAACAVVTGFIAA
RVGASFSQRLRSLEFNKVESFGPAEMNRFSTASLITRSTNDITQIQMFITMGLMMIVKAPIMAVWAVCKIAGKGFDWTLA
TGIAVAILLVVIAVIMSFVMPKFKAMQRLTDNINLVARENLTGLRVVRAYNAEDYQEAKFTEANKELTETQLFTNRAMAI
MMPLMNTIMNGLMLAVYWIGAYLIDAADAVDKLTTFSNMVVFSSYSIQVIMSFLLLSMVFVLWPRADVSAQRVLEVIDTE
PMVADGTQDAGKPGEEGEIEFRNVSFAYPDSRHAMLEGVNFKAKKGQTVAFIGSTGSGKSSLINLVPRFYDATQGEVLVD
GVNVRDYKLKALRDKIGYVPQQSFLFKGTIASNVAYGDTDRDDDTVRRACDVAQATEFIDKKQKKYDSGISQGGSNVSGG
QKQRLSIARAVYRHPEILIFDDSFSALDFKTDRAVRDALEKEAKDSTKLIVAQRIGTIMNADRIIVLDDGKVVGQGTHEE
LLDTCEVYRQIAESQLSEDELKR

Nucleotide


Download         Length: 1752 bp        

>NTDB_id=442720 HJ592_RS00555 WP_021912918.1 146685..148436(+) (rcrP) [Bifidobacterium adolescentis strain PRL2019]
ATGCTTCGCATCGTACGATACCTCTCCAAAGCGGAGATCGGTCAGATGCTCGTCGCGCTGGTCAGCATCGTCGGTCAGAT
CTGGCTTGACCTGACCCTGCCGGATTATATGGCCGACATCACGCAGCTCGTCGAAACCCCCGGCAGTGAAATGCACGACA
TCTGGGTGGCCGGCGGCAAAATGCTGCTCGTCTCGCTCGGCTCGGCGGCCTGCGCGGTCGTCACCGGCTTCATCGCCGCG
CGCGTGGGCGCCTCGTTCAGCCAGCGCCTGCGTTCGCTTGAATTCAACAAGGTGGAAAGCTTCGGACCGGCGGAAATGAA
CCGTTTCTCCACCGCGTCGCTCATCACCCGCTCCACGAACGACATCACGCAGATCCAGATGTTCATCACCATGGGCCTCA
TGATGATCGTCAAAGCGCCGATCATGGCCGTGTGGGCCGTGTGCAAGATCGCAGGAAAGGGCTTCGATTGGACGCTCGCA
ACCGGCATCGCCGTGGCCATCCTGCTGGTGGTCATCGCCGTGATCATGAGCTTCGTCATGCCGAAGTTCAAGGCCATGCA
GCGCCTGACCGACAACATCAACCTCGTGGCGCGCGAGAACCTCACCGGCCTGCGCGTGGTGCGCGCGTACAACGCCGAGG
ACTATCAGGAAGCCAAGTTCACCGAAGCCAACAAGGAACTCACCGAAACCCAGCTGTTCACCAACCGCGCCATGGCCATC
ATGATGCCGTTGATGAACACCATCATGAACGGCCTGATGCTCGCCGTCTACTGGATCGGCGCGTACCTCATCGACGCTGC
CGACGCCGTCGACAAGCTCACCACCTTCTCCAACATGGTGGTGTTCTCCAGCTACTCCATCCAGGTCATCATGAGCTTCC
TGCTGCTGAGCATGGTGTTCGTGCTCTGGCCGCGAGCCGACGTGTCCGCGCAGCGCGTGCTCGAAGTCATCGACACCGAG
CCGATGGTCGCCGACGGCACGCAGGACGCGGGCAAGCCGGGCGAGGAAGGCGAAATCGAATTCCGCAATGTGAGCTTCGC
CTACCCCGACTCGCGTCACGCCATGCTCGAAGGCGTCAATTTCAAGGCGAAGAAGGGTCAGACGGTGGCGTTCATCGGCT
CGACCGGCTCCGGCAAATCGTCCCTCATCAACCTCGTGCCGCGTTTCTACGACGCCACGCAAGGCGAGGTGCTCGTCGAC
GGCGTCAACGTGCGCGACTACAAGCTGAAGGCGTTGCGCGACAAGATCGGCTACGTGCCGCAGCAGTCGTTCCTGTTCAA
GGGAACGATCGCCAGCAACGTCGCGTACGGAGATACGGACCGCGACGACGACACCGTGCGCCGCGCATGCGACGTCGCGC
AGGCGACGGAATTCATCGACAAAAAGCAGAAGAAGTACGATTCCGGCATTTCGCAGGGCGGTTCCAACGTGTCGGGCGGG
CAGAAACAGCGCCTGTCGATCGCGCGCGCAGTCTACCGCCATCCGGAAATCCTGATCTTCGACGATTCCTTCTCCGCGCT
CGACTTCAAAACCGACCGTGCCGTACGTGACGCGCTCGAAAAGGAAGCGAAGGATTCCACGAAACTCATCGTCGCGCAGC
GCATCGGCACCATCATGAATGCCGACCGCATCATCGTGCTCGACGACGGCAAAGTGGTCGGCCAGGGCACGCACGAGGAA
CTGCTCGACACGTGCGAAGTGTATCGGCAGATCGCCGAATCGCAGTTGAGCGAAGACGAACTGAAGCGCTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-293)

ABC transporter (ABC_tran)

(356-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

50.251

100

0.515