Detailed information NTG0442709

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: IUD22_RS01825
• Genome accession: NZ_CP064330
• Coordinates: 447009..449486 (+)
• Length: 825 a.a.
• NCBI ID: WP_038231910.1
• Uniprot ID: -
• Organism: Xylella fastidiosa subsp. fastidiosa strain Bakersfield-13
• Function: DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 442009..454486

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IUD22_RS01800 (IUD22_01800)	-	443122..443907 (+)	786	WP_004089282.1	succinate dehydrogenase iron-sulfur subunit	-
IUD22_RS01805 (IUD22_01805)	-	444028..444276 (+)	249	WP_004089280.1	succinate dehydrogenase assembly factor 2	-
IUD22_RS01810 (IUD22_01810)	-	444299..444679 (+)	381	WP_011097604.1	hypothetical protein	-
IUD22_RS01815 (IUD22_01815)	-	444705..445946 (+)	1242	WP_004089276.1	lipoprotein-releasing ABC transporter permease subunit	-
IUD22_RS01820 (IUD22_01820)	lolD	445939..446661 (+)	723	WP_004089270.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
IUD22_RS01825 (IUD22_01825)	comA	447009..449486 (+)	2478	WP_038231910.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
IUD22_RS01830 (IUD22_01830)	exbB	449471..450133 (+)	663	WP_004085189.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
IUD22_RS01835 (IUD22_01835)	-	450138..450575 (+)	438	WP_004089267.1	biopolymer transporter ExbD	-
IUD22_RS01840 (IUD22_01840)	msbA	450593..452341 (+)	1749	WP_004089264.1	lipid A export permease/ATP-binding protein MsbA	-
IUD22_RS01845 (IUD22_01845)	lpxK	452338..453357 (+)	1020	WP_004089261.1	tetraacyldisaccharide 4'-kinase	-
IUD22_RS01850 (IUD22_01850)	-	453764..454465 (-)	702	WP_228446162.1	contractile injection system protein, VgrG/Pvc8 family	-

Sequence

Protein

• Length: 825 a.a.
• Molecular weight: 90793.88 Da
• Isoelectric Point: 9.4516

>NTDB_id=442709 IUD22_RS01825 WP_038231910.1 447009..449486(+) (comA) [Xylella fastidiosa subsp. fastidiosa strain Bakersfield-13]
MDDMKPEQRHMLQRCWVDVLSVIRHAACLRYLAFPALLPSAVALLLGCLAALTLPRLPPVWVLWIFLFVGVMLAVVVRRV
AWCGVVLFGFANCCLHGQFGLRHQLSFALEGRDLVLRGRIVSLPVPETRRTRFLLRVDTDQDQEPALRGRLLQLSWYDEN
KAVVPGPRSALHAGSVWQLHVRLRAPHSLMNPGGFDSERYALAQGIVATGYVRMPTMARELAAATGINAWRERMSARIAD
AVLLEASVYLRALALGDTRGLSQQDWEVLRATGLTHLIAISGFHVGMVAGACALLVSLLWRVFPHLAWRWPRPIAMALIA
VPAAAGYTVLAGASLPTVRTALMIGIVALARLTRRRAMPGHVLGLALLVVLVWDPLAILSAGFWLSFAGVAWLMWCMQDG
HAASCRGFLSAQGVATLGLLPFTVALFGQVSFVGPLANLIAIPLWTFVVVPLALLGTALEALVPGWGSPMWRLGGNFFQW
SWQLFEYLAQTDFALWWLPESDGVALGLALLGAFWLLLPRGTPGKWLALLLWLPLLWPERERPRPGEFEMQMLDVGQGLS
IVVRTSGHTLLYDAGPAVNDGFDAGERVVVPALRASGIRRLDALVASHADSDHVGGLPAVLKAYPVDISYAPPDAPLDVE
RRCSAGDSWLWDGVQFRFLHPAPHSRYLGNESSCVLRIDTRWGSALLTGDIGKVVERGLLSQDRESVRADVVVVPHHGSA
GSSSLGFVRAVNARLALVSSGDGNRFGHPRCSVVESWSETADVLLTAHSGAVRIWVGQQGLQLRERRVWRRRFWDAVERR
RSAAILSATEDVSKERRRNETCWNW

Nucleotide

• Length: 2478 bp

>NTDB_id=442709 IUD22_RS01825 WP_038231910.1 447009..449486(+) (comA) [Xylella fastidiosa subsp. fastidiosa strain Bakersfield-13]
ATGGACGATATGAAACCTGAGCAGCGACACATGTTGCAGCGATGTTGGGTTGACGTGTTAAGTGTGATCCGGCACGCAGC
GTGCCTGCGTTACCTCGCGTTTCCGGCGTTGTTGCCGAGTGCTGTTGCGTTGCTGCTGGGTTGTCTTGCTGCACTCACCT
TGCCGCGATTACCGCCCGTATGGGTGTTGTGGATTTTTCTGTTTGTCGGAGTAATGCTCGCTGTTGTCGTGCGCCGTGTT
GCTTGGTGCGGTGTGGTGTTGTTTGGTTTTGCTAACTGTTGCTTGCATGGTCAGTTTGGTTTGCGACATCAATTGTCGTT
CGCGTTGGAGGGCCGTGATCTGGTGTTACGTGGTCGGATCGTTTCTTTGCCGGTTCCAGAGACCAGGCGTACACGTTTCT
TGTTGCGTGTTGATACCGATCAAGATCAGGAACCAGCGCTGCGTGGTCGACTGCTGCAGTTATCCTGGTATGACGAGAAT
AAGGCGGTAGTACCGGGGCCACGCAGTGCATTGCATGCTGGATCTGTATGGCAGCTGCACGTGCGTCTGCGTGCGCCGCA
CAGTTTGATGAATCCCGGAGGTTTCGACAGCGAGCGTTATGCCCTAGCCCAGGGGATTGTTGCGACCGGTTACGTACGTA
TGCCGACGATGGCACGTGAGCTTGCGGCAGCCACTGGCATCAATGCTTGGCGGGAACGGATGTCTGCGCGTATTGCTGAT
GCGGTGTTGTTGGAAGCGTCGGTGTATTTACGTGCGTTGGCCTTGGGTGATACCCGGGGTTTGTCTCAACAGGATTGGGA
AGTATTGCGCGCTACAGGGCTGACGCATTTGATTGCGATCTCGGGGTTCCATGTCGGTATGGTCGCTGGTGCCTGTGCGT
TGCTTGTGTCGTTGCTGTGGCGAGTTTTCCCACATTTGGCTTGGCGTTGGCCGCGGCCAATCGCTATGGCACTCATTGCG
GTACCGGCCGCAGCCGGCTACACCGTCCTGGCTGGGGCGTCACTGCCCACAGTGAGAACCGCTTTGATGATCGGCATCGT
CGCATTGGCGCGCCTCACTCGGCGTCGTGCCATGCCGGGTCATGTCCTGGGGCTTGCCTTGCTTGTCGTACTTGTTTGGG
ATCCATTAGCCATTCTTAGTGCTGGCTTCTGGCTCAGCTTTGCCGGTGTCGCTTGGTTAATGTGGTGTATGCAAGACGGT
CATGCCGCGTCTTGTCGTGGCTTCTTATCGGCACAAGGTGTTGCAACCCTTGGGTTATTACCATTCACCGTGGCTTTATT
TGGTCAGGTTTCGTTTGTTGGGCCTTTGGCTAACTTGATTGCGATTCCGTTATGGACCTTTGTCGTTGTACCGCTGGCGT
TGTTAGGGACTGCGCTGGAAGCGTTAGTGCCAGGGTGGGGTAGCCCCATGTGGCGTTTGGGGGGGAATTTTTTCCAATGG
AGTTGGCAGCTATTCGAATACTTGGCACAGACTGATTTCGCATTGTGGTGGTTGCCGGAATCTGATGGTGTTGCATTGGG
GTTGGCCTTGCTGGGAGCGTTTTGGTTGCTGTTACCACGCGGTACGCCTGGTAAGTGGTTGGCGCTGTTGCTGTGGTTGC
CTTTGTTGTGGCCTGAGCGTGAGCGTCCCCGCCCCGGGGAGTTTGAGATGCAGATGCTGGACGTGGGGCAAGGACTGTCG
ATTGTGGTGCGTACTTCAGGCCATACGTTGTTGTACGACGCAGGTCCAGCAGTGAATGATGGTTTCGATGCCGGTGAGCG
TGTTGTGGTGCCGGCATTACGTGCCAGTGGCATCCGTCGCTTGGATGCATTGGTGGCTAGTCATGCTGATAGTGATCACG
TCGGAGGTTTGCCCGCGGTCCTGAAGGCTTATCCGGTTGATATCAGCTACGCTCCTCCGGATGCTCCACTCGACGTTGAG
CGCCGTTGCAGTGCTGGGGACAGTTGGCTGTGGGATGGAGTCCAGTTTCGTTTCTTACATCCTGCACCGCATTCGAGGTA
TTTAGGTAACGAGTCCAGTTGTGTATTGCGTATCGACACGCGCTGGGGCAGTGCTTTGTTGACGGGTGACATCGGCAAAG
TGGTCGAACGTGGTTTATTGAGTCAGGATCGTGAGAGTGTACGTGCCGATGTGGTGGTCGTACCGCATCATGGGAGCGCC
GGTTCTTCCTCGCTTGGGTTTGTCCGTGCGGTTAATGCGCGGTTAGCTTTGGTATCCAGTGGTGATGGTAACCGCTTCGG
TCATCCGCGCTGTTCGGTGGTGGAGAGCTGGAGTGAAACGGCAGATGTGTTGCTTACTGCGCATAGCGGCGCAGTACGGA
TTTGGGTTGGACAGCAGGGTCTGCAGTTACGTGAACGCCGTGTTTGGCGTCGTCGATTCTGGGATGCGGTCGAACGTCGC
CGATCCGCTGCTATCCTATCCGCCACTGAAGATGTATCCAAAGAGCGTCGGAGAAACGAGACATGCTGGAACTGGTAA

Domains

Predicted by InterProScan.

• Competence protein (Competence) (253-520)

• Domain of unknown function (DUF4131) (DUF4131) (59-215)

• Metallo-beta-lactamase superfamily (Lactamase_B) (554-722)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Ralstonia pseudosolanacearum GMI1000	37.108	100	0.373