Detailed information NTG0044269

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: HMPREF1038_RS10990
• Genome accession: NC_018630
• Coordinates: 2048780..2049877 (+)
• Length: 365 a.a.
• NCBI ID: WP_000266662.1
• Uniprot ID: Q8DMX3
• Organism: Streptococcus pneumoniae gamPNI0373
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2043780..2054877

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HMPREF1038_RS10965 (HMPREF1038_02230)	pgsA	2044301..2044846 (-)	546	WP_000712132.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
HMPREF1038_RS10970 (HMPREF1038_02231)	rodZ	2044857..2045678 (-)	822	WP_001227958.1	cytoskeleton protein RodZ	-
HMPREF1038_RS10975 (HMPREF1038_02232)	yfmH	2045720..2047003 (-)	1284	WP_000170194.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
HMPREF1038_RS10980 (HMPREF1038_02233)	yfmF	2047000..2048250 (-)	1251	WP_000424262.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
HMPREF1038_RS10985 (HMPREF1038_02234)	yaaA	2048409..2048777 (+)	369	WP_000455903.1	S4 domain-containing protein YaaA	-
HMPREF1038_RS10990 (HMPREF1038_02235)	recF	2048780..2049877 (+)	1098	WP_000266662.1	DNA replication/repair protein RecF	Machinery gene
HMPREF1038_RS10995 (HMPREF1038_02236)	guaB	2049928..2051406 (-)	1479	WP_000073428.1	IMP dehydrogenase	-
HMPREF1038_RS11000 (HMPREF1038_02237)	trpS	2051558..2052583 (-)	1026	WP_000165444.1	tryptophan--tRNA ligase	-
HMPREF1038_RS11005 (HMPREF1038_02238)	-	2052789..2054411 (+)	1623	WP_000958770.1	ATP-binding cassette domain-containing protein	-

Sequence

Protein

• Length: 365 a.a.
• Molecular weight: 41916.00 Da
• Isoelectric Point: 9.0596

>NTDB_id=44269 HMPREF1038_RS10990 WP_000266662.1 2048780..2049877(+) (recF) [Streptococcus pneumoniae gamPNI0373]
MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIHFDEEQLHLSGLVQKKTGS
IPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQR
NTYLKSAQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNITDKQNLSESFKI
ALEKSRSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLDHLQNLPENLSIFTIQDGKASVNGN

Nucleotide

• Length: 1098 bp

>NTDB_id=44269 HMPREF1038_RS10990 WP_000266662.1 2048780..2049877(+) (recF) [Streptococcus pneumoniae gamPNI0373]
ATGTGGCTACAACATCTATCTCTCAAGACTTTTCGTAATTACAAAGAAACGAAAATAGACTTTAATCCTAAATTGAATGT
CTTTTTGGGACGTAATGCACAAGGAAAAACAAACATGTTAGAGGCTATCTATTTTTTAGCCTTAACGCGTAGTCATCGAA
CTCGAACAGATAAAAATCTCATTCATTTTGATGAGGAACAACTTCATCTTTCAGGTCTCGTTCAGAAAAAAACTGGATCC
ATTCCCCTAGAAATCGAACTAACACAAAAAGGCCGTGTAACAAAAGTTAATCACTTAAAACAGGCACGCCTTTCAGATTA
TGTAGGACACATGAATGTTGTCTTATTTGCTCCTGAAGATTTACAACTAATTAAAGGAGCACCTTCGATTCGACGAAAAT
TCATTGATATGGAACTTGGGCAAATTAAGCCAATCTATTTATCTGACTTAACCAATTATAACCACATCCTAAAGCAAAGA
AACACTTACCTAAAATCAGCTCAAAAAATAGATGAAACATTCCTTTCTGTGTTAGATGATCAGCTAGTTGATTATGGATG
TCGTGTAATGAATCACCGCTTAGATTTCATAAAAAAACTAGAATCATTTGGGCGTAAGAAACATTTTGAACTCTCTAATC
AGATCGAAGAGTTGTCAATATCCTATCAATCTTCTGTCAATATAACTGACAAACAAAACTTATCCGAATCTTTCAAAATT
GCTTTAGAAAAAAGTAGATCCAGAGATTTATTTAAAAAGAATACTGGTGTCGGTCCTCATCGAGATGACATTTCTTTTTA
TATAAATGGGATGGATGCTAGTTTCGGAAGCCAAGGTCAACATCGTAGTCTCGTCCTCTCGATAAAATTAGCAGAAATCG
AATTAATGGAAAGCATTACCACAGAATCTCCTATATTACTGCTTGACGATGTGATGAGTGAACTTGACAACACTAGACAG
TTAAAATTATTAGAAACGATTTCTCAATCAATCCAAACCTTTATCACAACAACAAGCTTAGACCATCTTCAAAATCTGCC
AGAAAATCTAAGTATCTTCACTATTCAGGATGGTAAAGCTTCTGTAAATGGAAATTGA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: Q8DMX3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	100	100	1
recF	Bacillus subtilis subsp. subtilis str. 168	45.902	100	0.46