Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   IUD25_RS04175 Genome accession   NZ_CP064328
Coordinates   989739..991175 (-) Length   478 a.a.
NCBI ID   WP_004091195.1    Uniprot ID   B2IAJ4
Organism   Xylella fastidiosa subsp. fastidiosa strain Bakersfield-14     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 984739..996175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUD25_RS04150 (IUD25_04150) - 985418..985837 (+) 420 WP_004091208.1 cupin domain-containing protein -
  IUD25_RS11860 - 986244..986375 (+) 132 WP_256626255.1 hypothetical protein -
  IUD25_RS11865 - 986389..986562 (+) 174 Protein_816 recombinase family protein -
  IUD25_RS04160 (IUD25_04160) - 986758..987831 (-) 1074 WP_012382544.1 toprim domain-containing protein -
  IUD25_RS04165 (IUD25_04165) - 987926..988924 (-) 999 WP_004091201.1 MBL fold metallo-hydrolase -
  IUD25_RS04170 (IUD25_04170) - 989056..989742 (-) 687 WP_004091197.1 TIGR02453 family protein -
  IUD25_RS04175 (IUD25_04175) sbcB 989739..991175 (-) 1437 WP_004091195.1 exodeoxyribonuclease I Machinery gene
  IUD25_RS04180 (IUD25_04180) - 991363..992640 (+) 1278 WP_012382545.1 hypothetical protein -
  IUD25_RS04185 (IUD25_04185) - 993608..995245 (+) 1638 WP_011097794.1 Na+/H+ antiporter -
  IUD25_RS04190 (IUD25_04190) - 995620..995814 (+) 195 WP_194957425.1 hypothetical protein -

Sequence

Protein


Download         Length: 478 a.a.        Molecular weight: 54953.17 Da        Isoelectric Point: 6.4620

>NTDB_id=442667 IUD25_RS04175 WP_004091195.1 989739..991175(-) (sbcB) [Xylella fastidiosa subsp. fastidiosa strain Bakersfield-14]
MPPSFLFYDLETFGQDPRRTRIAQFAAVRTDTQLNVIEEPISFLVKPADDLLPSPYATLITGITPQHAQREGINEAAAFA
HIAMQMTQPHTCSLGYNTLRFDDEFIRYGLFRHFYDPYEREWRNGNSRWDLLDMLRLMHAVRPEGIHWPTREDGAPSFKL
EHLALANHAREGTAHEALSDVYATISMARKFRAAQPRLWNYALQLRDKRFCANLLDITSIQPVLHISQRYPATQHCAAAV
LPLTTHPHINNRIIVFDLNGDIDTLLRLSAEDIADHLYTPALDLPEGEQRIPLKEVHLNKVPALIAWNHLRASDFTRLGM
DPSMLETKAAQLRACGPDLAEKVRNVFSHTYNTANDADASLYDGFLTEEDRRLLPQLRASSPDTLVTFEQRLRDPRLIEL
LFRYRARNFPETLSCDEQTRWDTYRRRRLTTDTGLSELTFDQYHAQIAELRITHSQDATKQTLLDQLAAWGSELSRTL

Nucleotide


Download         Length: 1437 bp        

>NTDB_id=442667 IUD25_RS04175 WP_004091195.1 989739..991175(-) (sbcB) [Xylella fastidiosa subsp. fastidiosa strain Bakersfield-14]
ATGCCGCCCAGCTTTCTGTTCTACGACTTAGAAACTTTCGGTCAGGACCCCCGTCGTACCCGCATCGCACAGTTTGCCGC
AGTACGGACGGACACCCAATTAAACGTCATCGAAGAACCAATTAGTTTTCTCGTCAAACCCGCCGATGACCTGCTCCCCT
CACCCTACGCCACACTCATCACCGGGATCACTCCGCAACACGCACAACGTGAAGGCATCAATGAAGCAGCAGCCTTCGCG
CACATTGCAATGCAGATGACACAACCACACACCTGCTCACTCGGCTACAACACCCTACGTTTCGACGACGAATTCATCCG
CTACGGGCTATTCCGTCACTTCTACGACCCATACGAACGCGAGTGGCGCAACGGCAATTCACGGTGGGACCTGCTGGACA
TGCTGCGACTCATGCACGCAGTACGCCCAGAAGGCATCCACTGGCCAACACGTGAAGACGGTGCCCCCTCATTCAAACTC
GAACACCTAGCCCTTGCCAACCATGCACGCGAAGGCACAGCACACGAAGCATTATCAGATGTTTATGCCACCATCAGCAT
GGCGCGTAAATTCCGCGCCGCACAACCGCGCCTCTGGAATTACGCACTGCAACTGCGTGACAAACGCTTTTGCGCCAACC
TGCTCGACATCACCTCAATACAACCAGTACTGCATATCTCACAGCGCTATCCTGCCACACAACACTGCGCCGCCGCCGTG
CTGCCACTGACCACACACCCACACATCAACAACCGCATCATTGTTTTCGACTTGAACGGCGACATAGACACACTGCTGCG
CCTGTCTGCAGAAGACATCGCCGACCACCTGTACACCCCAGCCCTGGATTTACCCGAAGGCGAGCAACGTATCCCACTGA
AAGAAGTCCACCTCAACAAAGTACCGGCCCTGATCGCCTGGAACCACCTGCGTGCATCGGACTTCACACGCCTTGGCATG
GACCCGAGCATGCTAGAAACCAAAGCGGCACAACTGCGCGCATGCGGACCAGATTTGGCCGAAAAAGTCCGCAACGTTTT
CAGCCATACCTACAACACCGCCAACGACGCTGATGCTTCACTGTACGACGGCTTCCTCACCGAAGAGGACCGCCGCCTCC
TGCCACAACTACGCGCCTCCTCTCCTGACACCTTGGTAACGTTCGAACAGCGCCTTCGCGATCCACGTCTCATCGAACTG
CTGTTCCGCTACCGCGCACGTAATTTTCCAGAAACCCTCTCTTGCGACGAACAGACACGCTGGGACACCTATCGGCGACG
CCGTCTGACCACCGACACCGGCCTATCAGAACTCACCTTCGACCAATACCACGCCCAAATTGCGGAATTACGGATAACGC
ACTCCCAAGATGCCACCAAACAGACCCTATTGGACCAACTCGCCGCCTGGGGCTCCGAACTATCCCGCACCCTATGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(7-185)

Exonuclease C-terminal (ExoI_SH3)

(206-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B2IAJ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

40.632

99.372

0.404