Detailed information NTG0442663

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: DSM104443_RS01960
• Genome accession: NZ_CP053069
• Coordinates: 368860..369813 (-)
• Length: 317 a.a.
• NCBI ID: WP_212756902.1
• Uniprot ID: A0A6M4GRB4
• Organism: Usitatibacter rugosus strain 0125_3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 363860..374813

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DSM104443_RS01930 (DSM104443_00360)	-	364023..364580 (+)	558	WP_171089019.1	hypothetical protein	-
DSM104443_RS01935 (DSM104443_00361)	cyoE	364628..365527 (+)	900	WP_171089020.1	heme o synthase	-
DSM104443_RS01940 (DSM104443_00362)	-	365524..366123 (+)	600	WP_212756900.1	SCO family protein	-
DSM104443_RS01945 (DSM104443_00363)	rpoH	366382..367224 (-)	843	WP_171096160.1	RNA polymerase sigma factor RpoH	-
DSM104443_RS01950 (DSM104443_00364)	ftsX	367305..368216 (-)	912	WP_171089021.1	permease-like cell division protein FtsX	-
DSM104443_RS01955 (DSM104443_00365)	-	368213..368863 (-)	651	WP_171089022.1	ATP-binding cassette domain-containing protein	-
DSM104443_RS01960 (DSM104443_00366)	pilA	368860..369813 (-)	954	WP_212756902.1	signal recognition particle-docking protein FtsY	Machinery gene
DSM104443_RS01965 (DSM104443_00367)	rsmD	369875..370426 (+)	552	WP_171089023.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
DSM104443_RS01970 (DSM104443_00368)	coaD	370429..370923 (+)	495	WP_171096165.1	pantetheine-phosphate adenylyltransferase	-
DSM104443_RS01975 (DSM104443_00369)	-	370926..371192 (+)	267	WP_171089024.1	YfhL family 4Fe-4S dicluster ferredoxin	-
DSM104443_RS01980 (DSM104443_00370)	-	371189..373135 (-)	1947	WP_171089025.1	dynamin family protein	-
DSM104443_RS01985 (DSM104443_00371)	mutM	373132..373947 (-)	816	WP_171089026.1	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	-

Sequence

Protein

• Length: 317 a.a.
• Molecular weight: 34045.11 Da
• Isoelectric Point: 9.7355

>NTDB_id=442663 DSM104443_RS01960 WP_212756902.1 368860..369813(-) (pilA) [Usitatibacter rugosus strain 0125_3]
MFSREPKPPKTDDTAASDWRTRLKAGLARTGDRLKEAANVFRAAPKIDEALYESLEGTLLASDVGTAATQRLIDELRRAV
KSKRLEEASALEGELRSALTRLLTPLEKPLPDSPPRPWVILLAGVNGAGKTTTIAKLTRLFQSQGKSVLLAAGDTFRAAA
REQLMAWGERHGVTVVAQDKGDSAAVIFDAVQSAKAKGIDVVLADTAGRLPTQMHLMEEIRKVKRVIAKADPSAPHETWL
VLDANTGQNAVQQVKAFDEALQLTGLIVTKLDGTAKGGALAAIATERPIPVRFIGVGEKADDLRPFVAAEFVEALFS

Nucleotide

• Length: 954 bp

>NTDB_id=442663 DSM104443_RS01960 WP_212756902.1 368860..369813(-) (pilA) [Usitatibacter rugosus strain 0125_3]
TTGTTCTCGCGCGAACCGAAGCCTCCCAAGACCGACGACACCGCTGCCTCCGACTGGCGCACGCGCCTGAAGGCGGGCCT
TGCGCGCACGGGCGATCGACTGAAGGAAGCCGCGAACGTCTTTCGCGCCGCGCCGAAGATCGACGAGGCGCTCTACGAAT
CGCTGGAGGGCACGCTGCTCGCGAGCGACGTGGGCACCGCCGCCACCCAGCGCCTGATCGACGAGCTGCGCCGCGCCGTG
AAGTCGAAGCGGCTCGAAGAGGCTTCCGCCCTCGAAGGCGAGCTGCGCTCCGCGCTCACTCGGCTTTTGACGCCGCTGGA
AAAGCCACTGCCCGACTCGCCGCCGCGCCCGTGGGTGATCCTGCTCGCCGGCGTGAACGGCGCCGGCAAGACCACCACCA
TCGCCAAGCTCACGCGCCTGTTCCAGTCGCAGGGGAAGTCCGTGCTCCTCGCGGCCGGCGATACCTTCCGCGCCGCGGCG
CGCGAGCAGCTCATGGCCTGGGGCGAGCGCCACGGCGTCACCGTCGTCGCACAGGACAAGGGCGACTCCGCGGCCGTCAT
CTTCGACGCGGTGCAGTCGGCGAAGGCCAAGGGCATCGACGTCGTGCTGGCCGACACGGCGGGACGCCTGCCGACCCAGA
TGCACCTGATGGAAGAGATCCGCAAGGTGAAGCGGGTGATCGCCAAGGCCGATCCCTCCGCGCCGCACGAGACCTGGCTG
GTGCTCGACGCGAACACGGGCCAGAACGCCGTGCAGCAGGTGAAGGCGTTCGACGAAGCGCTGCAGCTCACGGGCCTCAT
CGTCACCAAGCTCGACGGCACGGCCAAGGGCGGGGCGCTGGCGGCGATCGCGACGGAGCGCCCGATCCCCGTGCGCTTCA
TCGGCGTGGGCGAGAAGGCCGACGACCTCCGCCCGTTCGTCGCCGCGGAGTTCGTCGAGGCGCTGTTCTCGTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (118-316)

• SRP54-type protein, helical bundle domain (SRP54_N) (31-97)

3D structure

• AlphaFold DB: A0A6M4GRB4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	64.784	94.953	0.615