Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   HKW97_RS04295 Genome accession   NZ_CP053063
Coordinates   915559..917142 (-) Length   527 a.a.
NCBI ID   WP_407362910.1    Uniprot ID   -
Organism   Pseudomonas luteola strain JZ42     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 910559..922142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKW97_RS04270 (HKW97_04255) pilV 911258..911845 (-) 588 WP_407362905.1 type IV pilus modification protein PilV -
  HKW97_RS04275 (HKW97_04260) - 911878..912402 (-) 525 WP_407362906.1 GspH/FimT family pseudopilin -
  HKW97_RS04280 (HKW97_04265) - 912495..913007 (-) 513 WP_407362907.1 GspH/FimT family pseudopilin -
  HKW97_RS04285 (HKW97_04270) thiO 913106..914215 (+) 1110 WP_407362908.1 glycine oxidase ThiO -
  HKW97_RS04290 (HKW97_04275) pilR 914216..915556 (-) 1341 WP_407362909.1 sigma-54-dependent transcriptional regulator Regulator
  HKW97_RS04295 (HKW97_04280) pilS 915559..917142 (-) 1584 WP_407362910.1 sensor histidine kinase Regulator
  HKW97_RS04300 - 917132..917371 (-) 240 WP_239381792.1 PP0621 family protein -
  HKW97_RS04305 (HKW97_04285) - 917588..918601 (-) 1014 WP_010797197.1 outer membrane protein assembly factor BamD -
  HKW97_RS04310 (HKW97_04290) rluD 918759..919721 (+) 963 WP_026004137.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  HKW97_RS04315 (HKW97_04295) pgeF 919718..920461 (+) 744 WP_407362911.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 527 a.a.        Molecular weight: 58962.02 Da        Isoelectric Point: 7.1348

>NTDB_id=442626 HKW97_RS04295 WP_407362910.1 915559..917142(-) (pilS) [Pseudomonas luteola strain JZ42]
MSADFFHYNLQDSRILRLYHYYRVIVGLVFILLVSTNLDDNLLKVTEGKNFVVGSWIYLAGNILAIFLPPLRKQKQIFAL
ALVDIGLLTYLMYSAGGTPSGIGNLIIITVSIANILLVGRIGILLAALATLALIYATAYRTLSLPSEANQYVQAGGLGAL
CFAAAFLVQSLVSRLSKSQTLAEERAHVVADLENLNALILDRMRTGILVLDSRMAPILANPAARELLGHPELDTGELNDQ
CPELMDRLQQWERNRTLRPAPMQAFSEGPLIQPSFVPIQRSGNQHILIFLENISRIAQQAQQLKLASLGRLTAGIAHEIR
NPLGAISHAAQLLQESEVLDQHDLRLAQIIQDHSRRMNIIIENVLQLSRRRQAEPQLLDLKYWVHRFAGEFRTTLREQQL
VYVQTTSGTIQTRMDPSQLTQVLTNLVQNGLRHSSKLHGKGQVWLDLFRDPDSDLPILDVIDDGPGVPEDQITNLFEPFF
TTESKGTGLGLYISRELCESNQARLDYRQQEQGGCFRITFAHPRKLS

Nucleotide


Download         Length: 1584 bp        

>NTDB_id=442626 HKW97_RS04295 WP_407362910.1 915559..917142(-) (pilS) [Pseudomonas luteola strain JZ42]
GTGAGCGCTGATTTTTTTCATTACAACCTGCAGGACAGTCGTATCCTGAGGTTGTATCACTACTACCGGGTCATTGTCGG
GCTGGTTTTTATCCTTCTGGTTTCCACCAATCTGGACGACAACCTTCTGAAGGTAACCGAGGGTAAAAACTTTGTGGTCG
GCAGCTGGATTTACCTAGCGGGTAATATCCTGGCGATTTTTCTACCACCACTGCGCAAGCAAAAACAGATCTTTGCCCTG
GCTCTAGTGGATATCGGGCTGCTGACCTATCTCATGTACAGCGCTGGCGGTACACCGAGTGGTATTGGCAACCTCATCAT
CATTACCGTATCGATCGCCAACATTCTTCTCGTTGGGCGTATTGGAATTCTGCTGGCGGCCCTGGCTACCCTTGCCCTCA
TTTATGCCACCGCCTATAGAACGCTTAGCCTTCCCTCAGAGGCCAATCAGTATGTTCAGGCGGGAGGCCTGGGCGCACTG
TGCTTTGCCGCCGCATTTCTGGTGCAAAGTCTCGTCAGCCGACTGTCCAAAAGCCAGACTCTGGCAGAAGAGCGGGCGCA
CGTTGTTGCCGATCTGGAAAATCTGAATGCGCTGATCCTGGACCGTATGCGCACCGGCATTCTGGTTCTGGACTCAAGAA
TGGCACCTATTCTAGCCAACCCTGCCGCTCGAGAGCTGCTCGGTCATCCAGAACTCGATACCGGGGAGTTGAATGATCAA
TGCCCCGAATTGATGGACCGGCTACAACAGTGGGAAAGGAACCGGACGCTTCGTCCTGCACCCATGCAAGCGTTCAGCGA
AGGCCCACTGATCCAGCCCAGCTTCGTCCCCATCCAACGGAGCGGCAATCAGCATATTCTGATTTTTCTGGAAAACATTT
CCCGTATTGCTCAGCAGGCCCAGCAGCTAAAGCTTGCATCATTGGGACGCCTCACGGCGGGCATTGCCCATGAAATTCGC
AACCCGCTGGGGGCCATAAGCCACGCGGCACAGCTTCTTCAGGAATCAGAAGTACTCGATCAGCATGATCTTCGCCTGGC
CCAGATCATTCAGGATCACTCCCGGCGCATGAACATCATCATCGAGAATGTCCTGCAACTGTCCAGACGCCGCCAGGCAG
AGCCCCAACTGCTGGACCTCAAGTACTGGGTGCACCGCTTTGCGGGTGAATTCAGAACCACTCTACGTGAGCAACAGCTT
GTCTATGTGCAAACGACATCAGGTACGATACAGACCCGCATGGACCCTAGCCAGCTGACTCAGGTGCTAACCAACCTCGT
TCAAAATGGCCTACGCCATAGCAGCAAGCTGCACGGCAAGGGACAAGTGTGGCTGGATCTCTTCCGTGACCCCGACTCAG
ACCTTCCCATATTGGATGTCATTGATGATGGGCCAGGTGTACCTGAAGACCAGATCACCAACCTTTTCGAACCCTTCTTT
ACCACCGAAAGCAAAGGAACCGGGCTCGGCCTCTATATTTCCCGCGAATTATGCGAGAGTAACCAGGCCCGCCTCGACTA
CCGCCAGCAGGAACAAGGCGGCTGCTTCCGCATTACCTTTGCCCATCCGCGCAAGTTGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(307-371)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

63.969

98.482

0.63