Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KQS_RS12520 Genome accession   NC_017025
Coordinates   2682503..2683864 (+) Length   453 a.a.
NCBI ID   WP_014389545.1    Uniprot ID   -
Organism   Flavobacterium indicum GPTSA100-9 = DSM 17447     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2677503..2688864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQS_RS12495 (KQS_12585) - 2678131..2678937 (-) 807 WP_014389540.1 glycogen/starch synthase -
  KQS_RS12500 (KQS_12590) panC 2679043..2679888 (+) 846 WP_014389541.1 pantoate--beta-alanine ligase -
  KQS_RS12505 (KQS_12595) panD 2679927..2680277 (+) 351 WP_014389542.1 aspartate 1-decarboxylase -
  KQS_RS12510 (KQS_12600) - 2680280..2681239 (+) 960 WP_014389543.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  KQS_RS12515 (KQS_12605) - 2681279..2682490 (+) 1212 WP_014389544.1 alpha/beta hydrolase -
  KQS_RS12520 (KQS_12610) radA 2682503..2683864 (+) 1362 WP_014389545.1 DNA repair protein RadA Machinery gene
  KQS_RS14105 (KQS_12615) - 2683920..2685626 (-) 1707 WP_014389546.1 hypothetical protein -
  KQS_RS12530 (KQS_12620) - 2685632..2686099 (-) 468 WP_014389547.1 T9SS type A sorting domain-containing protein -
  KQS_RS12535 (KQS_12625) - 2686314..2686829 (+) 516 WP_014389548.1 hypothetical protein -
  KQS_RS12540 (KQS_12630) - 2686896..2688773 (+) 1878 WP_316929939.1 biosynthetic peptidoglycan transglycosylase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50389.77 Da        Isoelectric Point: 5.6225

>NTDB_id=44260 KQS_RS12520 WP_014389545.1 2682503..2683864(+) (radA) [Flavobacterium indicum GPTSA100-9 = DSM 17447]
MAKLKTSFYCQNCGTNFSKWLGQCTSCKQWNTIVEEIIQKEEKQAWRSQSSENKKAPKPLKINEISTSEEVRLNTTDSEL
NRVLGGGLVPGSLTLLGGEPGIGKSTLLLQISLRLPYKTLYVSGEESQKQIKMRAERITHQSDNCFILTETKTQNIFRQI
EEIEPEVVIIDSIQTLQTDYIESSAGSISQIRECTAELIKFAKETNVPVILIGHITKDGTIAGPKILEHMVDTVLQFEGD
RNHVYRILRSLKNRFGSTAELGIYEMQGSGLREVSNPSEILISNKENYLSGTAIATTLEGMRPLMIEIQALVSTAVYGTP
QRSTTGYNLKRLNMILAVLEKRAGFRLGAKDVFLNITGGISVDDPAIDLAVVAAILSSNEDITIDKDFCFAGEVGLTGEI
RPVNRVEQRIQEAEKLGFSTIFVSKYNKITPQDYKIDVRLVAKIEDLVQELFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=44260 KQS_RS12520 WP_014389545.1 2682503..2683864(+) (radA) [Flavobacterium indicum GPTSA100-9 = DSM 17447]
ATGGCAAAACTTAAAACTTCTTTTTATTGTCAAAACTGCGGTACAAATTTCTCTAAATGGTTAGGACAGTGTACTTCGTG
TAAACAGTGGAATACTATAGTTGAAGAAATCATTCAAAAGGAAGAAAAACAGGCTTGGCGGTCACAATCATCTGAAAACA
AAAAAGCACCAAAGCCATTAAAAATAAATGAAATAAGTACTTCAGAAGAGGTACGGTTAAACACAACCGATAGCGAATTA
AATCGAGTTTTAGGGGGTGGTCTTGTACCTGGTTCATTAACCCTATTAGGGGGTGAACCAGGGATAGGAAAAAGCACCTT
GCTTTTACAAATTTCATTACGTCTACCCTATAAAACGCTATATGTTTCTGGTGAAGAAAGCCAAAAACAAATTAAAATGC
GAGCCGAGAGAATTACACATCAATCCGACAATTGTTTCATTTTAACCGAAACAAAAACACAAAACATCTTTCGTCAAATC
GAAGAAATTGAACCTGAAGTAGTAATTATAGACTCCATTCAAACCCTTCAAACCGATTATATTGAATCTTCTGCAGGTAG
TATTTCTCAAATTAGAGAATGTACGGCTGAACTCATCAAATTTGCAAAAGAAACCAATGTACCTGTTATATTAATAGGAC
ACATTACCAAAGATGGTACAATTGCAGGTCCAAAGATATTGGAACACATGGTTGATACCGTTTTACAATTTGAAGGCGAC
AGAAATCATGTCTACCGAATTTTACGTTCCTTAAAAAATCGTTTTGGATCAACAGCAGAATTAGGCATCTATGAAATGCA
AGGTTCAGGGTTACGAGAAGTTTCTAATCCTTCTGAAATATTAATTTCCAACAAAGAAAATTATCTTTCAGGAACAGCCA
TTGCAACCACTCTTGAAGGGATGCGTCCACTGATGATAGAAATTCAAGCCTTAGTTTCTACTGCAGTTTATGGCACCCCT
CAACGAAGCACTACTGGTTACAATTTAAAAAGGTTGAACATGATTTTGGCTGTATTAGAAAAACGAGCAGGATTTAGATT
AGGCGCCAAAGATGTCTTTTTAAATATTACAGGTGGAATTTCGGTTGACGATCCGGCTATAGATTTAGCCGTAGTTGCTG
CCATTTTATCTTCCAACGAAGACATTACGATTGATAAAGATTTTTGCTTTGCAGGTGAAGTTGGTCTTACTGGAGAAATT
AGGCCTGTAAATCGAGTGGAACAACGTATACAAGAAGCTGAAAAATTAGGTTTTTCAACAATTTTTGTTTCAAAATACAA
TAAAATTACCCCACAAGATTATAAGATTGATGTTCGATTAGTGGCAAAAATTGAAGATTTAGTTCAGGAATTATTTGGAT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(65-219)

Subunit ChlI of Mg-chelatase (ChlI)

(334-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

50

100

0.506
  radA Streptococcus pneumoniae D39

50

100

0.506
  radA Streptococcus pneumoniae R6

50

100

0.506
  radA Streptococcus pneumoniae TIGR4

50

100

0.506
  radA Streptococcus mitis SK321

50.219

100

0.506
  radA Streptococcus mitis NCTC 12261

50.219

100

0.506
  radA Bacillus subtilis subsp. subtilis str. 168

50.694

95.364

0.483

Multiple sequence alignment