Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   HKW99_RS03685 Genome accession   NZ_CP053061
Coordinates   777312..777863 (-) Length   183 a.a.
NCBI ID   WP_407295134.1    Uniprot ID   -
Organism   Stutzerimonas zhaodongensis strain JZ60     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 772312..782863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKW99_RS03675 (HKW99_03665) - 775862..776467 (-) 606 WP_407295129.1 PilX N-terminal domain-containing pilus assembly protein -
  HKW99_RS03680 (HKW99_03670) - 776464..777315 (-) 852 WP_407295131.1 PilW family protein -
  HKW99_RS03685 (HKW99_03675) pilV 777312..777863 (-) 552 WP_407295134.1 type IV pilus modification protein PilV Machinery gene
  HKW99_RS03690 (HKW99_03680) - 777875..778507 (-) 633 WP_407295137.1 GspH/FimT family pseudopilin -
  HKW99_RS03695 (HKW99_03685) - 778534..779031 (-) 498 WP_407295138.1 GspH/FimT family protein -
  HKW99_RS03700 (HKW99_03690) thiO 779187..780281 (+) 1095 WP_407295141.1 glycine oxidase ThiO -
  HKW99_RS03705 (HKW99_03695) - 780530..780901 (+) 372 WP_407295143.1 translation initiation factor Sui1 -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20021.89 Da        Isoelectric Point: 4.8500

>NTDB_id=442591 HKW99_RS03685 WP_407295134.1 777312..777863(-) (pilV) [Stutzerimonas zhaodongensis strain JZ60]
MKNSKGFSLIEVLVALLLTTIGVLGMVALQGRSIQYTQDSVQRNTAIVLAGDLIEIVRAHPKELFKTSPPQFPMNSGLKD
TSMFYKAAGDDFADRESCVASPTRIAQTAKELRDCWADRVEALLPGGTELLDSDAYICRSSKPNVCDGKGSMLEIRLAWQ
VREGSCLDSENSDVCSYTVRVEP

Nucleotide


Download         Length: 552 bp        

>NTDB_id=442591 HKW99_RS03685 WP_407295134.1 777312..777863(-) (pilV) [Stutzerimonas zhaodongensis strain JZ60]
ATGAAGAACAGCAAAGGCTTCAGCCTGATTGAGGTACTCGTAGCCCTATTGTTAACCACCATCGGTGTACTCGGCATGGT
GGCACTGCAAGGACGCAGCATTCAATACACCCAGGACTCTGTACAGCGCAACACAGCCATCGTCCTGGCCGGTGACTTGA
TCGAGATCGTTAGAGCGCACCCGAAGGAGCTTTTCAAAACATCCCCCCCTCAATTCCCCATGAACAGCGGGTTAAAAGAC
ACCTCGATGTTCTACAAAGCCGCTGGGGATGACTTCGCGGACCGCGAAAGCTGCGTAGCAAGTCCGACCCGGATTGCACA
AACAGCAAAAGAATTGCGCGACTGCTGGGCGGACAGGGTTGAGGCGTTATTGCCAGGCGGGACTGAACTGTTAGACAGCG
ACGCGTATATCTGCCGCAGTTCTAAACCAAATGTTTGCGACGGCAAAGGCTCAATGCTCGAGATTCGCTTGGCTTGGCAA
GTTCGCGAAGGCTCGTGCCTCGACTCGGAAAATTCCGACGTTTGCAGTTATACAGTTCGGGTAGAACCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

50

100

0.508