Detailed information NTG0442552

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: IUD24_RS04435
• Genome accession: NZ_CP064325
• Coordinates: 1034262..1035698 (-)
• Length: 478 a.a.
• NCBI ID: WP_031345817.1
• Uniprot ID: -
• Organism: Xylella fastidiosa subsp. multiplex strain Red Oak
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1029262..1040698

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IUD24_RS04420 (IUD24_04420)	-	1031292..1032484 (-)	1193	Protein_867	toprim domain-containing protein	-
IUD24_RS04425 (IUD24_04425)	-	1032450..1033448 (-)	999	WP_004085391.1	MBL fold metallo-hydrolase	-
IUD24_RS04430 (IUD24_04430)	-	1033579..1034265 (-)	687	WP_012337799.1	TIGR02453 family protein	-
IUD24_RS04435 (IUD24_04435)	sbcB	1034262..1035698 (-)	1437	WP_031345817.1	exodeoxyribonuclease I	Machinery gene
IUD24_RS11025	-	1035886..1036176 (+)	291	WP_027700686.1	hypothetical protein	-
IUD24_RS04440 (IUD24_04440)	-	1036146..1037000 (+)	855	WP_031345816.1	hypothetical protein	-
IUD24_RS04445 (IUD24_04445)	-	1037923..1039560 (+)	1638	WP_038259951.1	Na+/H+ antiporter	-
IUD24_RS04450 (IUD24_04450)	-	1039935..1040483 (+)	549	WP_004085386.1	hypothetical protein	-

Sequence

Protein

• Length: 478 a.a.
• Molecular weight: 54942.21 Da
• Isoelectric Point: 6.5860

>NTDB_id=442552 IUD24_RS04435 WP_031345817.1 1034262..1035698(-) (sbcB) [Xylella fastidiosa subsp. multiplex strain Red Oak]
MPPSFLFYDLETFGQDPRRTRIAQFAAVRTDTQLNVIEEPISFLVKPADDLLPSPYATLITGITPQHAQREGISEVAAFA
HITMQMTQPHTCSLGYNTLRFDDEFIRYGLFRHFYDPYEREWRNGNSRWDLLDMLRLMHALRPEGIHWPTREDGAPSFKL
EHLALANHAREGTAHEALSDVYATISMARKFRAAQPRLWNYALQLRDKRFCANLLDITSIQPVLHISQRYPATQHCAAAV
LPLTTHPHINNRIIVFDLNGDIDTLLRLSAEDIADHLYTPALDLPEGEQRIPLKEVHLNKVPALIAWNHLRASDFTRLGL
NPAMLETKAAQLRACGPDLAEKVRHVFSHTYNTANDADASLYDGFLTEEDRRLLPQLRASPADTLATFEQRLRDPRLIEL
LFRYRARNFPETLSCDEQTRWDTYRRRRLTTDTGLSELTFDQYHAQIAELRITHSQDATKQTLLDQLAAWGSELSRTL

Nucleotide

• Length: 1437 bp

>NTDB_id=442552 IUD24_RS04435 WP_031345817.1 1034262..1035698(-) (sbcB) [Xylella fastidiosa subsp. multiplex strain Red Oak]
ATGCCCCCCAGCTTTCTGTTCTACGACTTAGAAACTTTCGGTCAGGACCCCCGTCGTACCCGCATCGCACAGTTTGCCGC
AGTACGGACGGACACCCAATTAAACGTCATCGAAGAACCAATTAGTTTCCTCGTCAAACCCGCCGATGACCTGCTCCCCT
CACCCTACGCCACACTCATCACCGGAATTACCCCGCAACACGCACAACGTGAAGGCATCAGCGAAGTCGCAGCCTTCGCG
CACATTACAATGCAGATGACACAACCACACACCTGCTCCCTCGGCTACAACACGCTACGTTTCGACGACGAATTCATCCG
CTACGGGCTATTCCGTCACTTCTACGACCCATACGAACGCGAGTGGCGCAACGGCAATTCACGGTGGGACCTGCTGGACA
TGCTGCGACTCATGCACGCACTACGCCCAGAAGGCATCCACTGGCCAACACGTGAAGACGGTGCCCCCTCATTCAAACTC
GAACACCTAGCCCTTGCCAACCATGCACGCGAAGGCACAGCACACGAAGCATTATCAGATGTCTATGCCACCATCAGCAT
GGCGCGTAAATTCCGCGCCGCACAACCGCGCCTCTGGAATTACGCACTGCAACTGCGTGACAAACGCTTTTGCGCCAACC
TGCTCGACATCACCTCAATACAACCAGTACTGCATATCTCACAGCGCTATCCTGCCACACAACACTGCGCCGCCGCCGTG
CTGCCACTGACCACACACCCACACATCAACAACCGCATCATTGTTTTCGACTTGAACGGCGACATAGACACACTGCTGCG
CCTGTCTGCAGAAGACATCGCCGACCACCTGTACACCCCAGCCCTGGATTTACCCGAAGGCGAGCAACGTATCCCACTGA
AAGAAGTCCACCTAAACAAAGTACCGGCCCTGATCGCCTGGAACCACCTGCGTGCATCGGACTTCACACGCCTTGGCCTG
AACCCGGCCATGCTAGAAACCAAAGCGGCACAACTGCGCGCATGCGGACCGGATTTGGCCGAAAAAGTCCGCCACGTCTT
CAGCCATACCTACAACACCGCCAACGACGCTGATGCTTCACTGTACGACGGCTTTCTCACCGAAGAGGACCGCCGCCTCC
TGCCACAACTACGCGCCTCCCCTGCTGACACCTTGGCGACGTTCGAACAGCGCCTTCGCGATCCACGTCTCATCGAACTG
CTGTTCCGCTACCGCGCACGTAATTTTCCAGAAACCCTCTCTTGCGACGAACAGACACGCTGGGACACCTATCGGCGACG
CCGTCTGACCACCGACACCGGCCTATCAGAACTCACCTTCGACCAATACCACGCCCAAATTGCGGAATTACGGATAACGC
ACTCCCAAGATGCCACCAAACAGACCCTATTGGACCAACTCGCCGCCTGGGGCTCCGAACTATCCCGCACCCTATGA

Domains

Predicted by InterProScan.

• Exonuclease C-terminal (ExoI_SH3) (206-472)

• Exonuclease (RNase_T) (7-185)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	40.421	99.372	0.402