Detailed information NTG0442534

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: IUD24_RS01780
• Genome accession: NZ_CP064325
• Coordinates: 443315..445792 (+)
• Length: 825 a.a.
• NCBI ID: WP_012337634.1
• Uniprot ID: -
• Organism: Xylella fastidiosa subsp. multiplex strain Red Oak
• Function: DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 438315..450792

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IUD24_RS01755 (IUD24_01755)	-	439428..440213 (+)	786	WP_004085195.1	succinate dehydrogenase iron-sulfur subunit	-
IUD24_RS01760 (IUD24_01760)	-	440334..440582 (+)	249	WP_004085194.1	succinate dehydrogenase assembly factor 2	-
IUD24_RS01765 (IUD24_01765)	-	440533..440985 (+)	453	WP_004085193.1	hypothetical protein	-
IUD24_RS01770 (IUD24_01770)	-	441011..442252 (+)	1242	WP_004085192.1	lipoprotein-releasing ABC transporter permease subunit	-
IUD24_RS01775 (IUD24_01775)	lolD	442245..442967 (+)	723	WP_004085191.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
IUD24_RS01780 (IUD24_01780)	comA	443315..445792 (+)	2478	WP_012337634.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
IUD24_RS01785 (IUD24_01785)	exbB	445777..446439 (+)	663	WP_004085189.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
IUD24_RS01790 (IUD24_01790)	-	446444..446881 (+)	438	WP_004089267.1	biopolymer transporter ExbD	-
IUD24_RS01795 (IUD24_01795)	msbA	446899..448647 (+)	1749	WP_004085187.1	lipid A export permease/ATP-binding protein MsbA	-
IUD24_RS01800 (IUD24_01800)	lpxK	448644..449663 (+)	1020	WP_004085186.1	tetraacyldisaccharide 4'-kinase	-

Sequence

Protein

• Length: 825 a.a.
• Molecular weight: 90742.68 Da
• Isoelectric Point: 9.3129

>NTDB_id=442534 IUD24_RS01780 WP_012337634.1 443315..445792(+) (comA) [Xylella fastidiosa subsp. multiplex strain Red Oak]
MDDMKPEQRHVLQRCWVDVLSVTRHATCLRYLAFPALLPSAVALLLGCLAALTLPRLPPVWVLWIFLFVGVMLAVIVRRV
AWCGVVLFGFANCCLHGQFGLRHQLSLALEGRDLVLRGRIVSLPVPETRRTRFLLRVDTDQDQEPALRGRLLQLSWYDEN
KAVAPGPRSELHAGSVWQLHVRLRAPHSLLNPGGFDSERYALAQGIVATGYVRAPTMARELAAATGINAWRERMSARIAD
AVLLEASVYLRALALGDTRGLSQQDWEVLRATGLTHLIAISGFHVGMVAGACALLVSLLWRVFPHLAWRWPRPLAMALIA
VPAAAGYTVLAGASLPTVRTALMIGIVALARLTRRRAMPGHVLGLALLVVLVWDPLAILSAGFWLSFAGVAWLLWCMQDG
HAAPWRGFLSAQGVATLGLLPFTVALFGQVSFVGPLANLIAIPLWTFVVVPLALLGTALEALVPGWGSPMWRLGGNCFQW
SWQLFEYLAQTDFALWWLPESDGVALGLALLGAFWLLLPRGTPGKWLALLLWLPLLWPERERPRPGEFEMQMLDVGQGLS
IVVRTSGHTLLYDAGPAVNDGFDAGERVVVPALRASGIRRLDALVASHADSDHVGGLPAVLKAYPVDISYAPPDAPLDVE
RRCSAGDSWLWDGVQFRFLHPAPHSRYLGNESSCVLRIDTRWGSALLTGDIGKVVERGLLSQDRESVRADVVVVPHHGSA
GSSSLGFVRAVNARLALVSSGDGNRFGHPRCSVVESWSETADVLLTAHSGAVRIWVGQQGLQLRERRVWRRRFWDAVERR
RSAAILSATEDVSKERRRNETCWNW

Nucleotide

• Length: 2478 bp

>NTDB_id=442534 IUD24_RS01780 WP_012337634.1 443315..445792(+) (comA) [Xylella fastidiosa subsp. multiplex strain Red Oak]
ATGGACGATATGAAACCCGAGCAGCGACACGTGTTGCAGCGATGTTGGGTTGACGTGTTAAGTGTGACCCGGCACGCAAC
GTGCTTGCGTTACCTCGCGTTTCCGGCGTTGTTGCCGAGTGCTGTTGCGTTGCTGCTGGGTTGTCTTGCTGCACTCACCT
TGCCGCGATTACCGCCCGTATGGGTGTTGTGGATTTTTCTGTTTGTCGGAGTAATGCTCGCTGTTATCGTGCGCCGTGTT
GCTTGGTGCGGTGTGGTGTTGTTTGGTTTTGCTAACTGTTGCTTGCATGGTCAGTTTGGTTTGCGACATCAATTGTCGTT
AGCGTTGGAGGGCCGCGATCTGGTGTTACGTGGTCGGATCGTTTCTTTGCCGGTTCCAGAGACCAGGCGCACACGTTTCT
TGTTGCGTGTGGATACCGATCAAGATCAGGAACCAGCGCTGCGTGGTCGACTGCTGCAGTTATCCTGGTATGACGAGAAT
AAGGCGGTAGCACCGGGGCCACGCAGTGAATTGCATGCTGGATCTGTATGGCAGCTGCACGTGCGTCTGCGTGCGCCGCA
CAGTTTGCTGAATCCCGGAGGTTTCGACAGCGAGCGTTATGCCCTAGCCCAGGGGATTGTTGCGACCGGTTACGTACGTG
CGCCGACGATGGCACGTGAGCTGGCGGCAGCCACTGGCATCAATGCTTGGCGGGAACGGATGTCTGCGCGTATTGCTGAT
GCGGTGTTGTTGGAAGCATCGGTGTATTTACGTGCGTTGGCCTTGGGTGATACCCGGGGTTTGTCTCAACAGGATTGGGA
AGTATTGCGCGCTACAGGGCTGACGCATTTGATTGCGATCTCGGGGTTCCATGTCGGTATGGTCGCTGGTGCCTGTGCGT
TGCTTGTGTCGTTGCTGTGGCGAGTTTTCCCACATTTGGCGTGGCGTTGGCCGCGGCCACTCGCTATGGCACTCATTGCG
GTACCGGCCGCAGCCGGCTACACCGTCCTGGCTGGGGCGTCACTGCCCACAGTGAGAACCGCTTTGATGATCGGCATCGT
CGCATTGGCGCGCCTCACTCGGCGTCGTGCCATGCCGGGTCATGTCCTGGGGCTTGCCTTGCTTGTCGTACTGGTTTGGG
ATCCATTAGCCATTCTTAGTGCTGGCTTCTGGCTCAGCTTTGCCGGTGTCGCTTGGTTACTGTGGTGTATGCAAGACGGT
CATGCCGCGCCTTGGCGTGGCTTCTTATCGGCACAAGGTGTTGCAACCCTTGGGTTATTACCATTCACCGTGGCTTTATT
TGGTCAGGTTTCGTTTGTTGGGCCTTTGGCTAACTTGATTGCGATTCCGTTATGGACCTTTGTCGTTGTACCGCTGGCGT
TGTTAGGGACTGCGCTGGAAGCGTTAGTGCCAGGGTGGGGTAGCCCCATGTGGCGTTTGGGGGGGAATTGTTTCCAATGG
AGTTGGCAGCTATTCGAATACTTGGCACAGACTGATTTCGCATTGTGGTGGTTGCCGGAATCTGATGGTGTTGCATTGGG
GTTGGCCTTGCTGGGAGCGTTTTGGTTGCTGTTACCACGCGGTACGCCTGGTAAGTGGTTGGCGCTGTTGCTGTGGTTGC
CTTTGTTGTGGCCTGAGCGTGAGCGTCCCCGCCCCGGGGAGTTTGAGATGCAGATGCTGGACGTGGGGCAAGGACTGTCG
ATTGTGGTGCGTACCTCAGGCCATACGTTGTTGTACGACGCAGGTCCAGCAGTGAATGATGGTTTCGATGCCGGTGAGCG
TGTTGTGGTGCCGGCATTACGTGCCAGTGGCATCCGTCGCTTGGATGCATTGGTGGCTAGTCATGCTGATAGTGATCACG
TCGGAGGTTTGCCCGCAGTCCTGAAGGCTTATCCGGTTGATATCAGCTACGCTCCTCCGGATGCTCCACTCGACGTTGAG
CGCCGTTGCAGTGCTGGGGACAGTTGGCTGTGGGATGGAGTCCAGTTTCGTTTCTTACATCCTGCACCGCATTCGAGGTA
TTTAGGTAACGAGTCCAGTTGTGTATTGCGTATCGACACGCGCTGGGGCAGTGCTTTGTTGACGGGTGACATCGGCAAAG
TGGTCGAACGTGGTTTATTGAGTCAGGATCGTGAGAGTGTACGTGCCGATGTGGTGGTCGTACCGCATCATGGGAGCGCC
GGTTCTTCCTCGCTTGGGTTTGTCCGTGCGGTTAATGCGCGGTTAGCTTTGGTATCCAGTGGTGATGGTAACCGCTTCGG
TCATCCGCGCTGTTCGGTGGTGGAGAGCTGGAGTGAAACGGCAGATGTGTTGCTTACTGCGCATAGCGGCGCAGTACGGA
TTTGGGTTGGACAGCAGGGTCTGCAGTTACGTGAACGCCGTGTTTGGCGTCGTCGATTTTGGGATGCGGTCGAACGTCGC
CGATCCGCTGCTATCCTATCCGCCACTGAAGATGTATCCAAAGAGCGTCGGAGAAACGAGACATGCTGGAACTGGTAA

Domains

Predicted by InterProScan.

• Domain of unknown function (DUF4131) (DUF4131) (59-216)

• Metallo-beta-lactamase superfamily (Lactamase_B) (554-722)

• Competence protein (Competence) (253-520)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Ralstonia pseudosolanacearum GMI1000	37.59	100	0.378