Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HG538_RS08375 Genome accession   NZ_CP053045
Coordinates   1785060..1785689 (+) Length   209 a.a.
NCBI ID   WP_000793790.1    Uniprot ID   A0A7L6ZPA1
Organism   Escherichia fergusonii strain HNCF11W     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1780060..1790689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG538_RS08355 (HG538_08360) - 1780467..1782227 (-) 1761 WP_000156542.1 Lon protease family protein -
  HG538_RS08360 (HG538_08365) matP 1782412..1782867 (+) 456 WP_000877154.1 macrodomain Ter protein MatP -
  HG538_RS08365 (HG538_08370) ompA 1782922..1783977 (-) 1056 WP_024256413.1 porin OmpA -
  HG538_RS08370 (HG538_08375) sulA 1784334..1784843 (-) 510 WP_000288735.1 SOS-induced cell division inhibitor SulA -
  HG538_RS08375 (HG538_08380) sxy/tfoX 1785060..1785689 (+) 630 WP_000793790.1 TfoX/Sxy family DNA transformation protein Regulator
  HG538_RS08380 (HG538_08385) yccS 1785652..1787805 (-) 2154 WP_032243386.1 YccS family putative transporter -
  HG538_RS08385 (HG538_08390) - 1787825..1788271 (-) 447 WP_002431615.1 YccF domain-containing protein -
  HG538_RS08390 (HG538_08395) helD 1788394..1790448 (+) 2055 WP_171882007.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24359.36 Da        Isoelectric Point: 9.5059

>NTDB_id=442450 HG538_RS08375 WP_000793790.1 1785060..1785689(+) (sxy/tfoX) [Escherichia fergusonii strain HNCF11W]
MKNLSYDRIYKSQEYLASLGRVNYRSLFGSYSLTISDTVFAMVADGELYLRACEQSVQYCVKHTPRWLTFMKKGRLVMLN
YYRVDESLWQDQQQLIRLSRYSLDAALKEKKSLGRKYRLRDLPNITYHLESLLNEAGIKDVSTLRILGAKMCWLRLKQMN
QHITVKILYLLEGAVQDIHEAALPVVRRQELAVWVESLTPDLALLASFD

Nucleotide


Download         Length: 630 bp        

>NTDB_id=442450 HG538_RS08375 WP_000793790.1 1785060..1785689(+) (sxy/tfoX) [Escherichia fergusonii strain HNCF11W]
ATGAAAAATCTATCCTATGATCGGATCTATAAATCACAAGAATATTTAGCATCCCTGGGCAGGGTGAACTATCGGTCTCT
GTTTGGCAGTTACAGCTTAACTATCAGCGATACCGTGTTTGCGATGGTGGCTGATGGTGAGTTATATCTGCGCGCCTGTG
AACAAAGCGTCCAGTATTGCGTCAAACATACCCCCCGCTGGTTAACGTTTATGAAAAAAGGGCGGTTGGTCATGCTGAAC
TATTACCGGGTAGATGAAAGTTTGTGGCAGGACCAGCAGCAATTAATTCGCCTGTCGCGTTATTCGCTGGATGCAGCTCT
TAAAGAGAAGAAGAGCCTTGGCAGGAAGTATCGCTTAAGAGATCTGCCTAACATTACTTATCATCTTGAGTCGTTGCTCA
ATGAGGCGGGTATTAAAGATGTCAGCACGTTGCGTATTTTGGGGGCAAAAATGTGCTGGTTAAGGTTAAAGCAGATGAAT
CAGCACATTACCGTGAAAATACTCTATTTGCTGGAAGGCGCGGTGCAGGATATTCATGAAGCAGCGCTCCCGGTGGTCCG
TCGCCAGGAGCTTGCTGTATGGGTGGAGTCTCTTACGCCAGATCTGGCGTTGCTGGCGTCATTTGATTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L6ZPA1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.856

100

0.699